Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02612 ATGGGTAGGAAGAAGCCAACAGCACGTGACGAAGAGAACCCGTCGCAGCAAGGCGGTGGGAAATCGAAAAAGAAGGCTCCGGTTATCGATGATGACGAGTACTCTATTGGAACCGAGTTATCAGAGGAGCCGGCCACGGCGCCGGAAGAGAAGGCTGCCGCCGGCGGGAAGAAGAAAGGTAAAAAAGGTCACGCTAAAGCTGCACAAGTTAAAGATAACGATGACGATGACGATGTTGATGATGACGGGGATGTGCCTGAAATTGTGTTCACTGGGAAGAAAAAGGGAAAATCGAAGAAGGGTGGTGGGGATAATGCGTTCACTGCGTCTAGTTTTGGTTTGCTTGGTGATGGTGATGATGATGAAGAGAAATCAGGGTTAACCATTGAGGGAGATGGCGAGGAGGAGGAAGATGAACCGGTGGTTAGTTTTTCAGGGAAGAAGAAGCCCTCGAAGGGTTCTAAGAAAGGCAGTAGTAGTTTGTTCACTGCCTCGGCTTTTGATGCAATTGAAGATGATAATGATGGTGAGGTGATGGATGATTCTGTAGATGATGGCAAAGATGAGAATGATGATGTTGATGAACCCATTACTGCTTTCACGGGGAAAAAGAAGTCTTCGAAAGGAAGCAAGAAGGGTGGTGCTTTATTTTCGGCTGCTAGTTTTGGTGAGATTGATGATGGAGAGGAGGGTAAGAATGAAAAGGAAGAAGACGATGATGAAGATATAGGACCAATCACTTTCTCGGGTAAGAAAAAGAAATCCAAGTCTTCAAAAAAGGCTGTTAATTCACTGAGTACAGCTTCTCCCGATGAAGATAATGTTTCTGTACCCGAGTCTGCTAAAGGTGGTGATGAAAAGGATGAGGATGATCTTTCTTTAATTGCATTTTCAGGTAAAAAGAAGTCTTCTAAAAAGAAAAGTAGTAGTACTGCTGCCAAAGTGAGTGATGAGATTGGGTTTGGGAGTGAGAGCATAGAGGTTGTTGGAATTAGTAATACTGATGCTGATAACAGTAATGTTTCTAAGACTGAAGAGGTCACTGAAACTTCCAAAAATAAGAAGAAGAATAAGAAGAAGAGTGGAAGAACTGCTCAAGAAGAAGAAGATTTAGACAAGATTCTTGCAGAGCTTGGTGAGGGCTCTACTGTAGCAAAACCTGCTACTCCTCCACCGCAGGATGATAAAGTTCAGCCTACTCCTGAAGTGGCAGCTTCTGTTGTTGATGCTTCAGGGGAAAAGGAGGGAGAAGAGGAGCCGGTAGAATCAGCTGCTGCAAAGAAGAAGAAAAAGAAGAAGGAAAAGGAAAAGGAGAAGAAGGCAGCTGCAGCGGCGGCCGTTGCTGGAAGTGCTCCAGAAAATGAAACCAAAGATGTTAAAGCCGAGACAATTGAATCAAAGAAGAATGATTCGAAGACTAAAGCAGCTGACAAGAAAGTTCCAAAGCATGTGAGGGAGATGCAAGAGGCACTGGCTCGAAGAAAAGAGGCTGAAGAAAGGAAGAAAAGAGAAGAGGAGGAGAGGTTAAGGAAGGAAGAAGAGGAGCGACGTAGGCAAGAAGAACTTGAGAGACAGGCAGAAGAGGCTAGACGCAGAAAGAAGGAAAGAGAAAAGGAGAAACTCCAGAAAAAGAAGCAAGAAGGTAAACTGTTAACTGGTAAGCAGAAAGAAGAAGCCCGCCGATTGGAGGCAATGAGGAGGCAGATTCTTAATAGCACAGGGGGTGTTACTCTTCCAACTGGAGACACCAGTGCTCCGGCCAAAAAACCCATATATCAGACAAAGAAGTTAAAACAAACCCATCGTAATCAGAATGGTGCTGCTTCTGTTCAGACAGCTGAAAGTATTGAAGCGAAGGAGACTACCACCACTGATGCTGGTTCAGAGGAACCAAAAAAGGTTGAAGAAATGGAGTCAATGCAGGTGGAGGACAAAGTTGAACTTCCTGAAGCTGTTGAAGAGGATATAGTGGAAGAAGATGATGTCGAGGATGAATGGGATGCAAAAAGCTGGGATGATGTAAATCTGAATGCCAAGGGCGCATTTGCTGATGAAGAGGAGCCTGAGCCGATTGTCAAAAAGGAGATTAAAAATGCGGTACCTGCTAACACTGCTGGTGCTTCTAATAAAACTGTTTCTAAGCCTGTGGCTGAAGAAATTGACGATAGGAAACAGGCTAAAGTTGTGGTTGTGGACAAAAATAAAAACCGTGATCCACCACCACCCAAGTCTGCCGAGCCTCCTAAGCCAAGTGATGAGAACCTCCGTTCCCCAATTTGCTGTATCATGGGGCATGTGGACACTGGCAAAACCAAACTGCTGGATTGTATTCGAGGTACTAATGTTCAAGAGGGTGAGGCTGGTGGTATCACACAACAGATTGGTGCAACATACTTTCCTGCTGAGAACATACGGGAAAGAACAAAGGAACTCAAAGCTGATGCAAAGCTGAAAGTTCCTGGGCTACTGGTCATTGATACCCCAGGACATGAATCATTCACTAACTTAAGGTCTCGGGGTTCAGGTCTATGTGATATTGCAATTTTGGTTGTTGACATTATGCATGGCTTAGAGCAACAAACGATAGAATCGCTCAATCTATTAAAAATGAGGAACACTGAATTCATTGTTGCCTTGAATAAGGTTGACAGGCTTTATGGGTGGAAAGCATGTCACAATGCTCCTATTGTTAAAACATTGAAACAGCAGTCTAAGGATGTTCAAAATGAATTTAATATGAGGCTCATTCAGATTATTACACAATTCAAGGAACAGGGGCTAAATACCGAGTTGTATTATAAAAACAAAGAAATGGGAGAAACATTCAGCATTGTGCCTACAAGTGCAATAAGTGGTGAAGGAATCCCAGATTTGTTATTACTGTTGGTTCAGTGGACTCAAAAAACGATGGTTGAGAAACTTACATACAGTAAAGAAGTGCAGTGCACTGTTTTGGAGGTCAAGGTTGTTGAAGGCCATGGAACTACTATTGATGTTGTTTTAGTCAATGGTGTTCTTCATGAAGGAGATCAAATAGTTGTCTGCGGAATGCAGGGGCCAATTGTTACCACAATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTTCGAGTCAAGGGAACATATCTCCATCACAAAGAAATCAAAGCCGCAATGGGCATAAAGATCTCTGCCCAGGGTCTTGAACATGCTGTTGCTGGCACCAGTATACATGTGGTGAAGCCTGATGATGATTTGGAAGATGTTAAAGCAGTAGCTGTGGAAGATATGGATTCAGTCATGAGAAGGATTGACAAGAGCGGTGAGGGTGTTTGTGTACAGGCATCTACCCTTGGCTCATTGGAAGCATTACTGGAGTTTTTGAAAACTCCGGAAGTGAATATTCCTGTTAGTGGTATAAGCATAGGCCCTGTACACAAAAAGGATGTAATGAAGGCCAGTGTAATGCTTGAAAAGAAACGAGAATATTCTACTATATTGGCATTTGATGTCAAAGTCACTCCTGAAGCTAGGGAACTTGCAGATGAATTGGGTGTGAAAATTTTTATTGCTGATATCATTTATCATCTGTTTGATCAATTTAAGGCATATATTGACACCATTAAGGAGGAGAAAAAGAGAGAAGCTGCTGATGAGGCAGTCTTCCCATGTGTTCTGAAAATCTTACCAAATTGTGTCTTCAACAAGAAGGATCCAATTGTTTTGGGAGTTGATGTCCTTGAAGGCATTGCAAAGGTTGGGACTCCAATTTGTATTCCTTCTAGAGAGTTCATTGATATTGGTCGCATTGCCTCCATTGAGAATAACCACAAACCTGTTGATTATGCAAAGAAGGGGCAGAAAGTAGCCATTAAGATTGGTGGCAGCAATTCTGAGGAGCAACAAAAAATGTTTGGTAGGCATTTTGAGATTGATGATGAACTTGTTAGCCATATTTCGCGGAGATCTATTGATATACTCAAATCTAATTATCGGGATGATCTGACTACGGAGGAATGGAGGCTGGTCGTGAAATTGAAGAATCTGTTCAAGATACAATGA 4044 0.4278 MGRKKPTARDEENPSQQGGGKSKKKAPVIDDDEYSIGTELSEEPATAPEEKAAAGGKKKGKKGHAKAAQVKDNDDDDDVDDDGDVPEIVFTGKKKGKSKKGGGDNAFTASSFGLLGDGDDDEEKSGLTIEGDGEEEEDEPVVSFSGKKKPSKGSKKGSSSLFTASAFDAIEDDNDGEVMDDSVDDGKDENDDVDEPITAFTGKKKSSKGSKKGGALFSAASFGEIDDGEEGKNEKEEDDDEDIGPITFSGKKKKSKSSKKAVNSLSTASPDEDNVSVPESAKGGDEKDEDDLSLIAFSGKKKSSKKKSSSTAAKVSDEIGFGSESIEVVGISNTDADNSNVSKTEEVTETSKNKKKNKKKSGRTAQEEEDLDKILAELGEGSTVAKPATPPPQDDKVQPTPEVAASVVDASGEKEGEEEPVESAAAKKKKKKKEKEKEKKAAAAAAVAGSAPENETKDVKAETIESKKNDSKTKAADKKVPKHVREMQEALARRKEAEERKKREEEERLRKEEEERRRQEELERQAEEARRRKKEREKEKLQKKKQEGKLLTGKQKEEARRLEAMRRQILNSTGGVTLPTGDTSAPAKKPIYQTKKLKQTHRNQNGAASVQTAESIEAKETTTTDAGSEEPKKVEEMESMQVEDKVELPEAVEEDIVEEDDVEDEWDAKSWDDVNLNAKGAFADEEEPEPIVKKEIKNAVPANTAGASNKTVSKPVAEEIDDRKQAKVVVVDKNKNRDPPPPKSAEPPKPSDENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEQQTIESLNLLKMRNTEFIVALNKVDRLYGWKACHNAPIVKTLKQQSKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTYSKEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAMGIKISAQGLEHAVAGTSIHVVKPDDDLEDVKAVAVEDMDSVMRRIDKSGEGVCVQASTLGSLEALLEFLKTPEVNIPVSGISIGPVHKKDVMKASVMLEKKREYSTILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDTIKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDVLEGIAKVGTPICIPSREFIDIGRIASIENNHKPVDYAKKGQKVAIKIGGSNSEEQQKMFGRHFEIDDELVSHISRRSIDILKSNYRDDLTTEEWRLVVKLKNLFKIQ* 1348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02612 1347 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 755 971 IPR000795 GO:0003924|GO:0005525
Rops6g02612 1347 MobiDBLite consensus disorder prediction 705 756 - -
Rops6g02612 1347 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 755 1046 IPR027417 -
Rops6g02612 1347 MobiDBLite consensus disorder prediction 455 564 - -
Rops6g02612 1347 MobiDBLite consensus disorder prediction 411 429 - -
Rops6g02612 1347 MobiDBLite consensus disorder prediction 715 742 - -
Rops6g02612 1347 CDD IF2_eIF5B 758 968 - -
Rops6g02612 1347 MobiDBLite consensus disorder prediction 170 192 - -
Rops6g02612 1347 MobiDBLite consensus disorder prediction 597 622 - -
Rops6g02612 1347 Coils Coil 421 446 - -
Rops6g02612 1347 CDD IF2_aeIF5B_IV 1218 1313 - -
Rops6g02612 1347 Gene3D Translation factors 1210 1347 - -
Rops6g02612 1347 FunFam eukaryotic translation initiation factor 5B 978 1097 - -
Rops6g02612 1347 Pfam Elongation factor Tu GTP binding domain 759 967 IPR000795 GO:0003924|GO:0005525
Rops6g02612 1347 Pfam Elongation factor Tu domain 2 994 1070 IPR004161 GO:0005525
Rops6g02612 1347 Gene3D - 1099 1202 IPR036925 -
Rops6g02612 1347 MobiDBLite consensus disorder prediction 648 668 - -
Rops6g02612 1347 FunFam Eukaryotic translation initiation factor 5B 749 977 - -
Rops6g02612 1347 MobiDBLite consensus disorder prediction 278 296 - -
Rops6g02612 1347 MobiDBLite consensus disorder prediction 569 588 - -
Rops6g02612 1347 Pfam Translation-initiation factor 2 1084 1196 IPR023115 -
Rops6g02612 1347 NCBIfam small GTP-binding protein domain 760 884 IPR005225 GO:0005525
Rops6g02612 1347 MobiDBLite consensus disorder prediction 327 346 - -
Rops6g02612 1347 MobiDBLite consensus disorder prediction 1 564 - -
Rops6g02612 1347 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 300 1344 IPR015760 -
Rops6g02612 1347 MobiDBLite consensus disorder prediction 361 376 - -
Rops6g02612 1347 FunFam Eukaryotic translation initiation factor 5B 1097 1203 - -
Rops6g02612 1347 Gene3D - 749 977 IPR027417 -
Rops6g02612 1347 CDD aeIF5B_II 979 1089 - -
Rops6g02612 1347 FunFam Eukaryotic translation initiation factor 5B 1210 1347 - -
Rops6g02612 1347 MobiDBLite consensus disorder prediction 623 647 - -
Rops6g02612 1347 PRINTS GTP-binding elongation factor signature 823 833 IPR000795 GO:0003924|GO:0005525
Rops6g02612 1347 PRINTS GTP-binding elongation factor signature 759 772 IPR000795 GO:0003924|GO:0005525
Rops6g02612 1347 PRINTS GTP-binding elongation factor signature 839 850 IPR000795 GO:0003924|GO:0005525
Rops6g02612 1347 PRINTS GTP-binding elongation factor signature 875 884 IPR000795 GO:0003924|GO:0005525
Rops6g02612 1347 Coils Coil 480 551 - -
Rops6g02612 1347 Gene3D Translation factors 978 1098 - -
Rops6g02612 1347 MobiDBLite consensus disorder prediction 594 672 - -
Rops6g02612 1347 SUPERFAMILY Translation proteins 1214 1346 IPR009000 -
Rops6g02612 1347 MobiDBLite consensus disorder prediction 260 274 - -
Rops6g02612 1347 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1080 1209 IPR036925 -
Rops6g02612 1347 MobiDBLite consensus disorder prediction 86 101 - -
Rops6g02612 1347 MobiDBLite consensus disorder prediction 123 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02612 Rops-Chr6 46856620 46869560 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02612 194 1347 Eukaryotic Initiation Factors Gene Family AT1G76810 65.459 0.0 1211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02612 K03243 - gmx:100814875 1622.06