Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02600 ATGCTTGGGGACTCAACTGTGTTAGGAGGAGGAGGAGGAGGAGGTGGAGGTGGAGGTGACGGTGGCTCCCGAGATGCAGTGGTGGCGGCTGCATCAGCAGTAGCTGGAACGCATGACGGGGCAACGGCGGTGGCAAGTGGTGGTGGGGTTGGATCAAATTCAGGGGATGATGAAAAGGGTAGAATAGAAGAGGGTGAACGTAGCTTCGGTGGTAACCGGTGGCCACGACAAGAGACTTTGGCGCTGTTAAGGATACGGTCGGATATGGACGTGGCGTTTCGAGATGCAAGTGTTAAGGGTCCTTTGTGGGAAGAAGTCTCCAGGAAACTGGCAGAGCTTGGGTATCACAGAAATGCCAAGAAGTGCAAAGAGAAATTCGAGAACGTTTACAAGTACCACAAGAGAACCAAAGAAGGTCGAAGTTGTAAACAAGATGGCAAAACTTATAGATTCTTTGATCAATTAGAAGCACTTGAGAATCACCCTCCAACAACTCAATCTCCCAACCCAACAAAACCACCACAATCAGTAGCACCAGTATCATCACTAGTAGTAACACCTGTAACAGTGTCACTCCCTACCACAGCAGCAACAACAGTGCCAAGGCCACCAGTGTCTAACACCACTCTTAATGTCCCCTATGTCACTGTTCCATCAACAACTACATTCCCTATAGCCATGCCTCAAGGCATTGTCACTACCCCATCAATCAACCTCACAATCCCTTCCTACACTCCAACAAACCCTACAAATTTCACACCATCAACAGCAAACCCTACTACGAACCCTCCTCACACTACAATCCCAGTTTCTTTCCCCACCATTCCAACGGATCTTTTGTCCAATTCTACCTCTTCATCAACCTCATCCGATGAAACATTGGAAGGGAGGCGCAAGAGGAAGCGCAAATGGAAGGACTTCTTCGAGAGACTAATGAAGGAAGTGATAGACAAGCAAGAGGAGTTGCAAAAGAGATTCTTGGAAGCCATAGAGAAACGTGAACATGACAGAATGGTTAGAGAAGAAGCATGGAGAGTACAAGAGATGCAAAGGATCAATAGAGAAAGGGAAATTCTTGCACAAGAAAGATCCATAGCTGCAGCTAAAGATGCTGCAGTAATGTCATTCTTGCAGAAGATAGCTGAACAGCAAAATATCGGACAAGTATTGAGTAACATCAACATCGTACAACCTCAACCACAACCAAGTGTAGCACCAGTACCAGTACCAGCTCCGCCGCCGGTGCAACAACCAGCACCTGTTGTTCAGCCTGGCCCACCATCACAACCTGTGATGCTGCCATTGGTCCCACAACAACAACAACAAGTGACAAACATGGAGATTGTAAAAGCTGATAATGGGGAGAATTTCATGCCAGGGAGTTCTTCAAGGTGGCCAAAAGTGGAGGTTCAAGCATTAATAAAGCTGAGAACAAGCCTCGATGCCAAGTACCAAGAGAATGGACCAAAAGGACCCCTGTGGGAAGAGATCTCAGCCTCAATGAGGAAGCTTGGTTACAACCGAAGTGCCAAAAGGTGCAAAGAAAAATGGGAGAACATTAACAAGTACTTCAAGAAAGTCAAGGAAAGTAACAAAAAGCGACCAGAAGATTCCAAAACATGCCCATATTTTCACCAGCTAGATGCTCTATATAGGGAGAGAAACAAGCTCGAGAACCCCACGAACCAGGTGGTGAAGCCGGAGAGCATGGTGGCGCCGTTGATGGTTCAGCCGGAGCAGCAATGGCCTCCAAGAGCAGGACCGGCAGGACCGGATGTGACCATGGAAGACGCGGAGAATGATCCGATGGAGCGGCACCATAGAGAGGAAGATGATGATGATGATGATGATGAAGAAGAAAAGGAAGGAGAGGAAGAAGAAGATGAAGGTGGTGGTGGTAACTATGAGATAGTGGCAAGCAAGCCTGCAACAACTTCAGTGGGAGCATCAGCTGAGTAG 1959 0.4768 MLGDSTVLGGGGGGGGGGGDGGSRDAVVAAASAVAGTHDGATAVASGGGVGSNSGDDEKGRIEEGERSFGGNRWPRQETLALLRIRSDMDVAFRDASVKGPLWEEVSRKLAELGYHRNAKKCKEKFENVYKYHKRTKEGRSCKQDGKTYRFFDQLEALENHPPTTQSPNPTKPPQSVAPVSSLVVTPVTVSLPTTAATTVPRPPVSNTTLNVPYVTVPSTTTFPIAMPQGIVTTPSINLTIPSYTPTNPTNFTPSTANPTTNPPHTTIPVSFPTIPTDLLSNSTSSSTSSDETLEGRRKRKRKWKDFFERLMKEVIDKQEELQKRFLEAIEKREHDRMVREEAWRVQEMQRINREREILAQERSIAAAKDAAVMSFLQKIAEQQNIGQVLSNINIVQPQPQPSVAPVPVPAPPPVQQPAPVVQPGPPSQPVMLPLVPQQQQQVTNMEIVKADNGENFMPGSSSRWPKVEVQALIKLRTSLDAKYQENGPKGPLWEEISASMRKLGYNRSAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYRERNKLENPTNQVVKPESMVAPLMVQPEQQWPPRAGPAGPDVTMEDAENDPMERHHREEDDDDDDDEEEKEGEEEEDEGGGGNYEIVASKPATTSVGASAE* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02600 652 MobiDBLite consensus disorder prediction 160 180 - -
Rops6g02600 652 MobiDBLite consensus disorder prediction 273 291 - -
Rops6g02600 652 SMART sant 70 132 IPR001005 -
Rops6g02600 652 SMART sant 461 523 IPR001005 -
Rops6g02600 652 FunFam Trihelix transcription factor GT-2 465 526 - -
Rops6g02600 652 FunFam Trihelix transcription factor GT-2 74 135 - -
Rops6g02600 652 CDD GT1 72 137 - -
Rops6g02600 652 Pfam Myb/SANT-like DNA-binding domain 72 158 IPR044822 -
Rops6g02600 652 Pfam Myb/SANT-like DNA-binding domain 463 550 IPR044822 -
Rops6g02600 652 PANTHER FI21293P1 51 601 - -
Rops6g02600 652 MobiDBLite consensus disorder prediction 40 73 - -
Rops6g02600 652 Coils Coil 305 332 - -
Rops6g02600 652 MobiDBLite consensus disorder prediction 56 71 - -
Rops6g02600 652 MobiDBLite consensus disorder prediction 273 299 - -
Rops6g02600 652 CDD GT1 463 528 - -
Rops6g02600 652 MobiDBLite consensus disorder prediction 1 24 - -
Rops6g02600 652 ProSiteProfiles Myb-like domain profile. 463 521 IPR001005 -
Rops6g02600 652 MobiDBLite consensus disorder prediction 577 652 - -
Rops6g02600 652 MobiDBLite consensus disorder prediction 610 632 - -
Rops6g02600 652 Gene3D - 74 135 - -
Rops6g02600 652 Gene3D - 465 526 - -
Rops6g02600 652 ProSiteProfiles Myb-like domain profile. 72 130 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02600 Rops-Chr6 46740398 46743665 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02600 70 581 Trihelix Transcription Factor Family AT1G76890 50.095 1.29e-146 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Rops6g02600 Myb_DNA-bind_4 2.8e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02600 - - pvu:PHAVU_007G079700g 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01082 5 22224476 22241514 Rops6g02600 6 46740398 46743665 PCT