Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02599 ATGGTATCCATCTCAAGGGCAATAAGGGACATATTATCTCTGACTGACTATATGCAGCAGCTTGGAGACTTGGAAACCTCCTCCGGTGAGGCCGTGGCGGTGGTGCATGACGGTGCCAACGGCGGTGAGGTGATTGCGGTGGATGCAATAAGTTCTGGAAGGGATGGTGATGAAGAAGGTGACAAGATCAGTAACGGTGGAAATAGGTGGCCCCGCCAAGAGGCCTTGGCTCTCTTGAAGATAAGGTCGGATATGGATGCTGTGTTTCGAGATTCAAGTCTTAAGGGTCCACTCTGGGAAGAAGTTTCAAGGAAACTAGCAGAACTGGGTTATCACAGAAGCGCAAAGAAGTGCAGGGAGAAATTTGAGAATGTGTACAAATATCACAAAAGAACCAAAGAGAGCAGAAGTGGAAAATCAGAAGGAAAAACCTATAGGTTTTTTGATCAATTACAAGCCCTTGAGAACCAATTCACAGTTTCTTACCCTCCAAAACCGCAACCTACTTTGGCAACAACAACAACAACAAACACAGTGGCATTGCCAACAAAGCCTAGTGATACTACAGCAATCTCCTATGTCACTACTGTTCCATCCACAAACCCTACAATCATTTCTCCTTCACCACCACCAGCCAATGGTACCACCACCATAACCTCTCCAACAGTAACAACCAACCCTAGAAACCCATCACAAGGCAACAATAATAATGTCCCATATTCTTTGCCCAACATGAACCTTTTATCAACCTCCACCTCCACCTCTTCTTCCACTGCTTCAGATGAAGACTTGGAAGAGAAATACAGAAAGAAGAGAAAATGGAAGGACTACTTTAGGAGGCTCACAAGGCATGTCTTAGCCAAGCAAGAGGAAATGCAGAAGAAGTTCTTGGAAGCCATAGACAAACGTGAGAGAGAACATATGGCACAACAAGATGTTTGGAGAATGCAAGAAATAACAAGGATTAATAGAGAACATGATCTTCTTGTCCAAGAAAGATCAACAGCAGCAGCAAAAAATGCAGCAGTTATTGCATTTTTGCAAAAGCTTTCTGGGCACCAAAATCCCACAACACAAACTACTACAACCGTTGGCAATTTCCTTCCACAACCACCACCACTATCACAACAACAACAACAACAAGCACAACCATCACCGTCACCACCAGTATCACAACCACAGCCAGTGCCACAACAGCAGCTTCGACATCCACCCTTGATACCGAACAACAATAATGAAATCCAGAAAATGAACAATGGTCACAGTACTACTCCATTGAGCTCTTCTAGGTGGCCAAAGGCTGAAGTTCAAGCTTTGATAAGGCTAAGAACAAGTCTTGAAGCTAAGTATCAAGATAATGGACCAAAAGCTCCATTGTGGGAAGATATATCAGCAGGTATGCAGAGACTTGGATACAACAGGAGTGCCAAAAGGTGCAAAGAGAAATGGGAGAATATCAACAAGTACTTCAAGAAAGTTAAGGAAAGTAACAAGCATAGACGTGAAGATAGCAAGACATGTCCCTATTTTCATGAGCTTGATGCTCTATACAAAGAAAAAAACAAAACACAAAACCCTTTTGATGTTTCATTCCACAACATGAGGCCAAATGAAATGATGGAACCATTGATGGTGCAACCGGAGCAACAATGGAGGCCTCCCCCTCAATATGAGCAATCAGAAGAGAAGAATGAAGGTAAACAAGAAACAAAAGAAAGAGATGAGGAAGAGACAGCAGCAGCAGAAGAAGAAGAAGATGAGCATGATAACGATGATGATGAAGAAGAAGGAGAAGGAGATAGCATGGAAGAAGAAGAAGGAGCTTAA 1827 0.4302 MVSISRAIRDILSLTDYMQQLGDLETSSGEAVAVVHDGANGGEVIAVDAISSGRDGDEEGDKISNGGNRWPRQEALALLKIRSDMDAVFRDSSLKGPLWEEVSRKLAELGYHRSAKKCREKFENVYKYHKRTKESRSGKSEGKTYRFFDQLQALENQFTVSYPPKPQPTLATTTTTNTVALPTKPSDTTAISYVTTVPSTNPTIISPSPPPANGTTTITSPTVTTNPRNPSQGNNNNVPYSLPNMNLLSTSTSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRHVLAKQEEMQKKFLEAIDKREREHMAQQDVWRMQEITRINREHDLLVQERSTAAAKNAAVIAFLQKLSGHQNPTTQTTTTVGNFLPQPPPLSQQQQQQAQPSPSPPVSQPQPVPQQQLRHPPLIPNNNNEIQKMNNGHSTTPLSSSRWPKAEVQALIRLRTSLEAKYQDNGPKAPLWEDISAGMQRLGYNRSAKRCKEKWENINKYFKKVKESNKHRREDSKTCPYFHELDALYKEKNKTQNPFDVSFHNMRPNEMMEPLMVQPEQQWRPPPQYEQSEEKNEGKQETKERDEEETAAAEEEEDEHDNDDDEEEGEGDSMEEEEGA* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02599 608 FunFam Trihelix transcription factor GT-2 70 131 - -
Rops6g02599 608 MobiDBLite consensus disorder prediction 546 608 - -
Rops6g02599 608 CDD GT1 68 133 - -
Rops6g02599 608 MobiDBLite consensus disorder prediction 353 385 - -
Rops6g02599 608 ProSiteProfiles Myb-like domain profile. 423 487 IPR001005 -
Rops6g02599 608 Gene3D - 431 492 - -
Rops6g02599 608 Gene3D - 70 131 - -
Rops6g02599 608 MobiDBLite consensus disorder prediction 210 259 - -
Rops6g02599 608 MobiDBLite consensus disorder prediction 403 431 - -
Rops6g02599 608 FunFam Trihelix transcription factor GT-2 431 492 - -
Rops6g02599 608 MobiDBLite consensus disorder prediction 576 608 - -
Rops6g02599 608 MobiDBLite consensus disorder prediction 353 431 - -
Rops6g02599 608 SMART sant 427 489 IPR001005 -
Rops6g02599 608 SMART sant 66 128 IPR001005 -
Rops6g02599 608 Coils Coil 557 591 - -
Rops6g02599 608 ProSiteProfiles Myb-like domain profile. 68 126 IPR001005 -
Rops6g02599 608 MobiDBLite consensus disorder prediction 558 575 - -
Rops6g02599 608 MobiDBLite consensus disorder prediction 201 263 - -
Rops6g02599 608 PANTHER FI21293P1 54 571 - -
Rops6g02599 608 Pfam Myb/SANT-like DNA-binding domain 429 516 IPR044822 -
Rops6g02599 608 Pfam Myb/SANT-like DNA-binding domain 68 154 IPR044822 -
Rops6g02599 608 MobiDBLite consensus disorder prediction 386 402 - -
Rops6g02599 608 CDD GT1 429 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02599 Rops-Chr6 46704076 46707754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02599 60 550 Trihelix Transcription Factor Family AT1G76890 47.217 1.97e-144 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Rops6g02599 Myb_DNA-bind_4 2.6e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02599 - - gmx:100799041 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01083 5 22306544 22309986 Rops6g02599 6 46704076 46707754 PCT