Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02597 ATGAAGTTTTCACTGAGATTGGGATGTGGGAAACTTCTAGACCCAGATTTTTTTAGGCTCTTCACTCGCCTAAGATTTGTGAGTTGTGACATCAATATAGTTCGTGATGTAAGGGATGGATTTGGAAGCTTATCAAGGCGGAGTTTTGAGGTTATGCTTCCTGGCCATCACAGGAGCAAGTCACGAAGTTCAGTCCATGAGTTGCAGGAGCAGCCTCCAGTTATACAGAACAGTCGATGGGCTAGCCTTCCACCTGAGCTTCTTCGCGATGTTATTAAGAGATTAGAAGCAAATGAGAGTACTTGGCCTGGTCGTAAGCATGTGGTTGCTTGTGCTGCTGTATGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTCAGCAGTCCTGAATTCTCTGGGAAGATTACTTTCCCTGTTTCCCTGAAGCAGCCTGGGTATAGGGATGGAATGATCCAGTGTTTCATCAAGAGAGACAAATCTAAGCTTACATACCACCTCTTCCTTTGCCTTAGTCCTGCCTTGCTTGTTGAAAATGGGAAGTTTCTTCTCTCTGCAAAACGGACCAGAAGAACTACTTGCACAGAGTATCTTATATCAATGAATGCAGATAACATATCAAGATCTAGTAGCACTTACATTGGAAAACTGAGGTCTAATTTTCTTGGCACCAAGTTTATAATTTATGATACCCAGCCTCCCTATAATAATGCTCAGCTGTCTCCACCAGGCCGCAGCCGCAGGTTTTATTCCAAAAAGGTTTCTCCAAAGGTCCCTAGTGGCAGCTACAATATTGCCCAGGTGACCTATGAGTTGAATGTCCTTGGTACTAGGGGCCCACGAAGGATGAATTGCACCATGTACTCAATCCCTGCATCATCCCTTGAACCTGGTGGCACTGTCCCAGGCCAGCCAGAGCTCCTTCCTCGCTCATTCGAGGATTCTTTCCGGAGTATGTCCTTCGCGAAATCAATCGACAATTCAACTGAGTTCAGTAGCTCAAGGTTCTCAGACATAATTGGAGTTGGCAATGAAGAGGAGGAGGGAAAGGAGAGACCACTAGTTCTTAAGAACAAGTCTCCAAGGTGGCATGAACAACTACAATGTTGGTGCCTCAACTTTAGGGGAAGGGTAACTGTTGCCTCTGTCAAGAATTTTCAGCTGATTGCTGCAACACAACCTGCAACTAGTGCTAGTGCTACAGGAACAGGACCTGCACCATCTCAGCCAACACAATCTGACCATGACAAGATTATTCTTCAGTTTGGCAAGGTTGGCAAGGATATGTTTACAATGGACTATCGATACCCCCTCTCAGCATTTCAGGCTTTTGCCATATGCTTGACTAGCTTTGACACAAAATTGGCATGTGAATAG 1374 0.4505 MKFSLRLGCGKLLDPDFFRLFTRLRFVSCDINIVRDVRDGFGSLSRRSFEVMLPGHHRSKSRSSVHELQEQPPVIQNSRWASLPPELLRDVIKRLEANESTWPGRKHVVACAAVCKSWREMCKEIVSSPEFSGKITFPVSLKQPGYRDGMIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYLISMNADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMYSIPASSLEPGGTVPGQPELLPRSFEDSFRSMSFAKSIDNSTEFSSSRFSDIIGVGNEEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPATSASATGTGPAPSQPTQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02597 457 FunFam Tubby-like F-box protein 137 457 - -
Rops6g02597 457 Gene3D - 75 128 - -
Rops6g02597 457 SUPERFAMILY Tubby C-terminal domain-like 129 457 IPR025659 -
Rops6g02597 457 Pfam Tub family 141 452 IPR000007 -
Rops6g02597 457 PRINTS Tubby superfamily signature 261 288 IPR000007 -
Rops6g02597 457 PRINTS Tubby superfamily signature 212 236 IPR000007 -
Rops6g02597 457 PRINTS Tubby superfamily signature 414 433 IPR000007 -
Rops6g02597 457 PRINTS Tubby superfamily signature 373 389 IPR000007 -
Rops6g02597 457 PRINTS Tubby superfamily signature 435 457 IPR000007 -
Rops6g02597 457 PRINTS Tubby superfamily signature 355 372 IPR000007 -
Rops6g02597 457 PRINTS Tubby superfamily signature 196 212 IPR000007 -
Rops6g02597 457 MobiDBLite consensus disorder prediction 393 413 - -
Rops6g02597 457 PANTHER TUBBY-RELATED 62 455 - -
Rops6g02597 457 SUPERFAMILY F-box domain 72 124 IPR036047 GO:0005515
Rops6g02597 457 Gene3D Tubby Protein; Chain A 139 451 IPR025659 -
Rops6g02597 457 FunFam Tubby-like F-box protein 75 128 - -
Rops6g02597 457 ProSitePatterns Tub family signature 1. 373 386 IPR018066 -
Rops6g02597 457 ProSitePatterns Tub family signature 2. 442 457 IPR018066 -
Rops6g02597 457 Pfam F-box domain 80 127 IPR001810 GO:0005515
Rops6g02597 457 CDD F-box_AtTLP-like 80 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02597 Rops-Chr6 46656969 46660966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02597 32 457 TUB Transcription Factor Family AT1G76900 70.067 0.0 599
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Rops6g02597 Tub 1.1e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02597 K19600 - gmx:100817532 768.844