Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02590 ATGTTCGCTCTTACCTCAATCAAAGGTATTGCCAGGCGATTTGTTAACATGGTCTGCAAGAAGGCTGATGTTGACATGAACAAGAGAGCTGGTGAACTAAGTGTTGCTGAGTTAGATAATCTGATGACTGTGGTTGCCAACCCTAGCCAATTCAAGATACCATACTGGTTTTTGAACAGGAATAAGGACTACAAGAATGACAAGTATTCTCAAGTGGTGTCAAATGCATTGGACATGAAGTTGAGGGATGACTTGGAGAGATTGAAGAAAATCAGATATTTAATATTTGGGTTGCAAATTTTCATGGAGCTAAATGTTTAA 321 0.3863 MFALTSIKGIARRFVNMVCKKADVDMNKRAGELSVAELDNLMTVVANPSQFKIPYWFLNRNKDYKNDKYSQVVSNALDMKLRDDLERLKKIRYLIFGLQIFMELNV* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02590 106 Gene3D 30s ribosomal protein s13, domain 2 67 106 IPR027437 -
Rops6g02590 106 PIRSF RPS13p_RPS13a_RPS18e_RPS13o 1 94 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Rops6g02590 106 Gene3D - 1 54 - -
Rops6g02590 106 SUPERFAMILY S13-like H2TH domain 2 93 IPR010979 GO:0003676
Rops6g02590 106 ProSiteProfiles Ribosomal protein S13 family profile. 1 92 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Rops6g02590 106 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 1 93 - -
Rops6g02590 106 Pfam Ribosomal protein S13/S18 2 92 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02590 Rops-Chr6 46573999 46574430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02590 1 92 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 86.957 4.94e-56 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02590 K02964 - mof:131155629 167.162