Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02581 ATGATTGGTCAGTGCTTCTCTACTAGGAATTTCACTCGCCGCACCAGCAGCTGCGCCAGGAGGAGGAGAAGGATGTCTCACAGGAAGTTCGAACATCCCAGGCACGGGTCTTTGGGATTTCTCCCAAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGTGAAGGCATTCCCTAAGGATGACCCATCCAAGTCACCCAAGCTTACTGCCTTCTTGGGTTACAAGGCTGGTATGACTCACATTGTCAGAGAGGTCGAGAAACCAGGATCAAAGCTTCACAAGAAGGAGACCTGCGAGCCAGTTACTATTATTGAGACCCCTCCAATGGTTATTGTCGGTGTTGTGGGTTATATTAAAACTCCTCGTGGTCTTCGAACATTGAACACTGTATGGACTCAGCATTTAAGTGAGGAAGTGAAGCGTAGGTTCTATAAGAACTGGTGCAAGTCCAAGAAGAAGGCTTTCTCCAAGTACTCAAAGCAGTATGAAACTGAAGAAGGGAAGAAAAGCATCCAGGCACAGCTTGAGAAACTCAAGAAGTATTCTACAGTTGTCCGTGTTTTGGCTCACACTCAGATCAGAAAAATGAAGGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTCAGGTTAATGGTGGGACCATTGCACAGAAGGTGGATTTTGCATACAGTTTCTTCGAGAAACAGGTTCCCATTGATGCTGTGTTCCAGAAGGATGAGATGATTGACATCATTGGGGTGACCAAAGGTAAGGGTTATGAAGGTGTGGTAACTCGTTGGGGTGTGACTCGCCTTCCCCGTAAGACTCACAGGGGTTTGAGGAAGGTGGCATGTATTGGTGCCTGGCATCCTGCAAGAGTTTCTTTCACTGTTGCCAGGGCTGGTCAGAATGGATACCACCACCGAACTGAGTTGAACAAGAAGATTTACAGGCTTGGTAAAGCTGGAGATGAGTCTCACTCTGCCGTTACCGAGTTTGATAGGACTGAGAAAGACATTACCCCAATGGGTGGTTTCCCACACTATGGTATTGTGAAGGAGGATTTTGTCATGATCAAGGGAGGCTGTGTTGGTCCCAAGAAAAGGGTAATTACATTGCGCCAATCCCTGCTTAAGCAGACTTCTCGTGTTGCACTGGAGGAGATCAAACTCAAGTTTATCGACACATCTTCAAAGTTTGGGCATGGCCGTTTCCAGACAACACAGGAGAAGCAGAAGTTCTATGGACGCCTCAAGGCATAA 1242 0.4718 MIGQCFSTRNFTRRTSSCARRRRRMSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKSPKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEPVTIIETPPMVIVGVVGYIKTPRGLRTLNTVWTQHLSEEVKRRFYKNWCKSKKKAFSKYSKQYETEEGKKSIQAQLEKLKKYSTVVRVLAHTQIRKMKGLKQKKAHIMEIQVNGGTIAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYRLGKAGDESHSAVTEFDRTEKDITPMGGFPHYGIVKEDFVMIKGGCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFYGRLKA* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02581 413 FunFam Ribosomal protein L3 289 413 - -
Rops6g02581 413 Gene3D - 107 231 - -
Rops6g02581 413 FunFam 60S ribosomal protein L3 25 98 - -
Rops6g02581 413 Gene3D Ribosomal protein L3, domain 3 25 298 IPR044892 -
Rops6g02581 413 ProSitePatterns Ribosomal protein L3 signature. 236 259 IPR019926 -
Rops6g02581 413 FunFam 60S ribosomal protein L3 68 184 - -
Rops6g02581 413 SUPERFAMILY Translation proteins 28 394 IPR009000 -
Rops6g02581 413 MobiDBLite consensus disorder prediction 15 31 - -
Rops6g02581 413 Gene3D Translation factors 68 409 - -
Rops6g02581 413 FunFam 60S ribosomal protein L3 250 298 - -
Rops6g02581 413 FunFam 60S ribosomal protein L3 107 231 - -
Rops6g02581 413 Pfam Ribosomal protein L3 25 394 IPR000597 GO:0003735|GO:0005840|GO:0006412
Rops6g02581 413 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 25 408 IPR045077 GO:0003735|GO:0005840|GO:0006412
Rops6g02581 413 MobiDBLite consensus disorder prediction 12 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02581 Rops-Chr6 46471453 46476598 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02581 25 411 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 86.305 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02581 K02925 K10999 gmx:100806786 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02581 6 46471453 46476598 Rops6g02581 6 46471453 46476598 ECH