Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02579 ATGTGCTTGTTAACGGTGGCGCACCAAAGGGGTTCAGGCAAGTTCATCGGGTTCACGGCGGAGCACGGTGGCGATGAGAAAGTGGAAGACACTTCAGAGCCATCATCATCACTAGGATTCAGGCAAGATGAGGTGGCAATGCCCGGCCCGGCCAATTTGGTGTCATCTGGGTCGGGTCAGACCCAGACCAACACTGAGTGGATCCCCCAGGGAAGTGGTTTTCCTATGATGTCAGGTTTTGTTCATGTCTCTTCTTCTCCTTCTTTGTATTCTTCTACTTCTGGCTCTCTTTTCGGGTCTGCCTCTGCTTCTGGTTCTTGGGTTGGTCACAAAAGAGGGCGTGAAGATGAGAGTGGTGCAGGTGCTTCTTCTCAATTGTTACAAGATGTGACTACACTTCATAGAAACGTGGGTGACTTCAGAGTACCTTCACAGGGACAGTCATCATCAGCTACAACTACAACGACACAATCGAGTGAAGCAGCATCAAGTGAAGAAACCGGGGAGAGAAGGAGATACAGAGGAGTGAGACAGAGACCGTGGGGGAAATGGGCAGCAGAGATTCGTGATCCTCATAAAGCAGCAAGAGTGTGGCTTGGAACATTCGAAACTGCAGAGGCTGCAGCTAGAGCCTATGATGAAGCTGCATTGAGGTTCAGAGGTAACAGAGCAAAACTCAACTTCCCAGAAAATGTTGCAACAATGCGACCACCCCTTCACGATTTTCCGGCAAATAGGACCCCTGTTTCTGTTTCCCCGGCAACCCATTATTCTCCAGCACCGCCGCCGCCACTCCAACCACCGTTCATGCAGGGTTCCTCTGATTCAATTAGAGACTATATGGAATATTCTCAGCTTCTAAAGGGTTCAGGTGACTTCCATGGACTTGAGCAATGGTTCTATGATTCACAAATGGCAGCACTTCATTCTTCTACTTCCTTGTTATCACCATCACCATCACCATCGCTTTCTTTGTCCTCTTCTTCATCACCAGCTGCTTTTTCAGCTTCTAGTCAATTGTCCTCTGCTTCGTTTCCCCTGTTTTCGGGTCAGCAAATGGGTTTTTTCCGGCCACCGGGAGACCACTCTCACGGCGGCGGAGATGGTGATGCCGGCGGGTCAAATTTTCCACCTTCAACATGGTCAGATACCAGTGGCTATCCTCCTCCATCTGGTTGA 1179 0.497 MCLLTVAHQRGSGKFIGFTAEHGGDEKVEDTSEPSSSLGFRQDEVAMPGPANLVSSGSGQTQTNTEWIPQGSGFPMMSGFVHVSSSPSLYSSTSGSLFGSASASGSWVGHKRGREDESGAGASSQLLQDVTTLHRNVGDFRVPSQGQSSSATTTTTQSSEAASSEETGERRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGNRAKLNFPENVATMRPPLHDFPANRTPVSVSPATHYSPAPPPPLQPPFMQGSSDSIRDYMEYSQLLKGSGDFHGLEQWFYDSQMAALHSSTSLLSPSPSPSLSLSSSSSPAAFSASSQLSSASFPLFSGQQMGFFRPPGDHSHGGGDGDAGGSNFPPSTWSDTSGYPPPSG* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02579 392 MobiDBLite consensus disorder prediction 351 392 - -
Rops6g02579 392 ProSiteProfiles AP2/ERF domain profile. 172 229 IPR001471 GO:0003700|GO:0006355
Rops6g02579 392 CDD AP2 180 231 IPR001471 GO:0003700|GO:0006355
Rops6g02579 392 Pfam AP2 domain 172 221 IPR001471 GO:0003700|GO:0006355
Rops6g02579 392 MobiDBLite consensus disorder prediction 312 331 - -
Rops6g02579 392 SMART rav1_2 172 235 IPR001471 GO:0003700|GO:0006355
Rops6g02579 392 MobiDBLite consensus disorder prediction 139 176 - -
Rops6g02579 392 MobiDBLite consensus disorder prediction 141 163 - -
Rops6g02579 392 Gene3D AP2/ERF domain 171 231 IPR036955 GO:0003700|GO:0006355
Rops6g02579 392 PANTHER DNA-BINDING DOMAIN 134 318 IPR044808 GO:0003700|GO:0009873
Rops6g02579 392 PRINTS Ethylene responsive element binding protein signature 173 184 IPR001471 GO:0003700|GO:0006355
Rops6g02579 392 PRINTS Ethylene responsive element binding protein signature 195 211 IPR001471 GO:0003700|GO:0006355
Rops6g02579 392 MobiDBLite consensus disorder prediction 375 392 - -
Rops6g02579 392 SUPERFAMILY DNA-binding domain 172 230 IPR016177 GO:0003677
Rops6g02579 392 FunFam Ethylene-responsive transcription factor 2 171 230 - -
Rops6g02579 392 MobiDBLite consensus disorder prediction 101 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02579 Rops-Chr6 46447815 46450272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02579 170 232 AP2-EREBP Transcription Factor Family AT5G61890 85.714 1.06e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops6g02579 AP2 4.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02579 - - lja:Lj5g3v1937400.1 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01112 5 22858528 22860838 Rops6g02579 6 46447815 46450272 PCT