Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02576 ATGGATCACAGCTGTCAAAAGATTATTAAATTATTAATTCAGATAAAAGCCAAAAACTGTTCTTTGAGCCCTCTCCACCGCCCTCTCCGGCATCATCACCACTGTCCTTCACCGGAGACGGAGACCGCCGGAACCACTTACCAGAAGCCGAGTCACTGTAGTCCTCTCCAGTGCCGACGAAAGTGTTATCTTTCTACACAGGTTATACACAATTCAACCATTACTCAGATGGATCCTCATGCTGAAGAGTTGCCTCAATATATACATATAAATCAGAATGAATTTTTTATGCGAAGGCATAAGAAACAAAAGGAGGAGGATATTGCTGTATGTGAATGCAGGTATGATGCCAATGACCCTGATAGTGCATGTGGGGACGGGTGCCTGAATGTATTAACCAGCACCGAATGCACCCCTGGTTATTGCCCTTGTGGTATATTTTGCAAAAATCAGAAATTTCAGAAATGTGAATATGCAAAAACAAAGTTGTTTAAAACGGAAGGCCGTGGATGGGGTCTTTTGGCTGATGAGGACATTAAGGCAGGACAATTTGTCATTGAATACTGTGGAGAAGTAATATCATGGAAAGAAGCCAAACGTAGATCCCAAGCTTATGAACTTCAAGGTCTTAAGGATGCATTTATCATTTGCCTTAATGCATCTGAATCTATTGATGCAACCAGAAAAGGAAGCCTTGCGAGATTTATAAATCATTCCTGTCAACCAAACTGTGAGACCAGAAAATGGAATGTCTTGGGGGAAATACGAGTCGGAATATTTGCAAAGCATGATATTCCTATTGGAACTGAATTGGCGTATGACTATAATTTCGAGTGGTTTGGAGGTGCAAAGGTTCGCTGCCTCTGTGGTGCACTCAAATGTTCTGGATTCCTTGGAGCAAAGTCTCGTGGTTTTCAGGAGGATACTTATCTATGGGAAGATGATGATGACAGGTACTCTGTTGAGAAAATTCCTGTGTATGACTCTGCAGAGGATGAACTGGTGTTAAACGTCAATGGACAAACCGAACACTCCATGGATGTTATACTTAAAGCTGAGCAACTATCGGAGTCCGTTGCTTTTAATGTTCAGCAACTCGATTCAGTTCAGATGAAGGGTTTAGATGCCAAGAAGATTAAAACTGACATAGTAGGCGAGCATATGAAGTTGTATTCCCAAGATACTGAACAGGCCCTTTCACAAAAGAATGCAATGATATCACGTATCCGAAGTAATACTGCAGGCAGAAACTATCGCATTGGACCTAGGTCCATATCTACCAAAAGATCAAAGGCATACAATGGAGGAAGGTTTAAAACTCTCATACAGAAGAAAATTGATGCAAAGTTTGCAGCTGGCCTCTTAGCATCAAAGGAAGCACAAGAGGAGATTTTAGATTATGAGAAAAGAAAAAATGACGCTACATCTGCTCTTGATTCCTTATACGATGAAATACGGCCTGCCATCGAAGAACATGAGAGGGATAGCCAAGACAGTGTATCTACGACGGTAGCAGAGAAGTGGATACAGGCTTGCTGCCTAAAATTGAAGGCGGAGTTTGACCTTCACTCGTCAATTGTCAAAAATGTTGCTTGCACTGCTCATAAGGCACCTGGCCTAGCAAAACCCACTGAAGTAGATAACGAAAACGAAATCAAGCTTTTGACAGATTGA 1674 0.417 MDHSCQKIIKLLIQIKAKNCSLSPLHRPLRHHHHCPSPETETAGTTYQKPSHCSPLQCRRKCYLSTQVIHNSTITQMDPHAEELPQYIHINQNEFFMRRHKKQKEEDIAVCECRYDANDPDSACGDGCLNVLTSTECTPGYCPCGIFCKNQKFQKCEYAKTKLFKTEGRGWGLLADEDIKAGQFVIEYCGEVISWKEAKRRSQAYELQGLKDAFIICLNASESIDATRKGSLARFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQEDTYLWEDDDDRYSVEKIPVYDSAEDELVLNVNGQTEHSMDVILKAEQLSESVAFNVQQLDSVQMKGLDAKKIKTDIVGEHMKLYSQDTEQALSQKNAMISRIRSNTAGRNYRIGPRSISTKRSKAYNGGRFKTLIQKKIDAKFAAGLLASKEAQEEILDYEKRKNDATSALDSLYDEIRPAIEEHERDSQDSVSTTVAEKWIQACCLKLKAEFDLHSSIVKNVACTAHKAPGLAKPTEVDNENEIKLLTD* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02576 557 SMART set_7 159 282 IPR001214 GO:0005515
Rops6g02576 557 Pfam SET domain 170 276 IPR001214 GO:0005515
Rops6g02576 557 FunFam Histone-lysine N-methyltransferase 73 311 - -
Rops6g02576 557 PANTHER SET DOMAIN PROTEINS 18 528 - -
Rops6g02576 557 Pfam AWS domain 119 156 IPR006560 GO:0005634|GO:0042054
Rops6g02576 557 Coils Coil 457 484 - -
Rops6g02576 557 ProSiteProfiles Post-SET domain profile. 283 299 IPR003616 -
Rops6g02576 557 ProSiteProfiles AWS domain profile. 106 157 IPR006560 GO:0005634|GO:0042054
Rops6g02576 557 Gene3D SET domain 38 311 IPR046341 -
Rops6g02576 557 SUPERFAMILY SET domain 84 296 IPR046341 -
Rops6g02576 557 ProSiteProfiles SET domain profile. 159 276 IPR001214 GO:0005515
Rops6g02576 557 SMART shorttest3 106 158 IPR006560 GO:0005634|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02576 Rops-Chr6 46386281 46397872 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02576 141 298 C2H2 Transcription Factor Family AT2G23740 34.807 3.68e-20 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops6g02576 SET 1.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02576 - - gmx:100775294 868.226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02576 6 46386281 46397872 Rops6g02576 6 46386281 46397872 ECH