Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02575 ATGGACCACGTCCCCATAGCCATCCTCGCCGCCATCGGCAGCTTCATCGTCGTCACCTTCATCCTCGCTGTCATCCTCGCCGTCTGCCAGCACCGCAACACTAAAACCCGAAACGACCGCGACAACAGCAACCAGATCCGAACCCGATCCAGTCGGAGCCCTAACTACTCCCTCCCGGTCGACGCCAGCTGGTCCTGGGACCCGAATCTAAAGATCTCCATGGAAGAACTCGCACGCGCCACCGATAACTTCTCCCCTCACCTCATAGTCGGCGACGGAAGCTTCGGCCTCGTCTACAAGGCACACCTCTCCACCGGTATCACCGTCGCCATTAAAAAACTCTCGCCGGACGCCTTCCAAGGGTTCCGTGAATTCACGGCGGAGATGGAAACCCTAAGCAAGCTCCGCCATAACAACATCGTGAAGATCCTCGGTTACTGGGCCTCCGGACCCGAACGGTTACTCGTTTACGAGTTCATCGAAAAAGGGAACCTCGATCAGTGGCTTCACGAACCTTCTTTCCCTCGCCCAAACGACGACGTTTCTTCAGACCTTGTTCGCTTACCCTTGTCTTGGGAAACAAGGGTCAAGATCATTCGCGGCGTGGCCCATGGGCTTTGCTACTTGCACGGGCTCGAAAAGCGCATCATTCATCGCGACATCAAAGCTAGCAATGTCTTGTTGGACTCTGAGTTTCACGCCCATATTGCTGATTTTGGGCTTGCACGTAGGATTGACACCTCGCATTCGCACGTGTCAACGCAGTTCGCGGGTACCTTTGGTTACATGCCCCCGGAATATAGGGATGGGGTTAATGTGACAAACACGAAGGTTGATGTGTATAGTTTTGGGGTGTTGATGATTGAAACCGCCTCAGGCCACCGGCCCAATTTGTCGGTGAAAATGGACCAAATTGACATTGGGCTGGTCCAATGGGCCAGGAAGATGAAAGAGCAAAACGCAGAAATGAAGATTTTAGATGTGAATATTTCAAGAGAAGGTGTGAGGGAGGAGTGTGTAAAAGAGTATATACACATTGCTTGCATGTGCACTGGTGAGTTACAAAAGGAAAGACCAGAAATGCCCGAGGTTGTTAGATTGTTGGATTCAATGCCTTGCTGA 1122 0.5214 MDHVPIAILAAIGSFIVVTFILAVILAVCQHRNTKTRNDRDNSNQIRTRSSRSPNYSLPVDASWSWDPNLKISMEELARATDNFSPHLIVGDGSFGLVYKAHLSTGITVAIKKLSPDAFQGFREFTAEMETLSKLRHNNIVKILGYWASGPERLLVYEFIEKGNLDQWLHEPSFPRPNDDVSSDLVRLPLSWETRVKIIRGVAHGLCYLHGLEKRIIHRDIKASNVLLDSEFHAHIADFGLARRIDTSHSHVSTQFAGTFGYMPPEYRDGVNVTNTKVDVYSFGVLMIETASGHRPNLSVKMDQIDIGLVQWARKMKEQNAEMKILDVNISREGVREECVKEYIHIACMCTGELQKERPEMPEVVRLLDSMPC* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02575 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Rops6g02575 373 Gene3D Phosphorylase Kinase; domain 1 44 159 - -
Rops6g02575 373 MobiDBLite consensus disorder prediction 35 55 - -
Rops6g02575 373 ProSiteProfiles Protein kinase domain profile. 84 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02575 373 ProSitePatterns Protein kinases ATP-binding region signature. 90 113 IPR017441 GO:0005524
Rops6g02575 373 CDD STKc_IRAK 90 371 - -
Rops6g02575 373 FunFam Phytosulfokine receptor 2 160 372 - -
Rops6g02575 373 SMART serkin_6 84 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02575 373 SUPERFAMILY Protein kinase-like (PK-like) 51 367 IPR011009 -
Rops6g02575 373 Gene3D Transferase(Phosphotransferase) domain 1 160 372 - -
Rops6g02575 373 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 370 - -
Rops6g02575 373 FunFam Phytosulfokine receptor 2 45 159 - -
Rops6g02575 373 Pfam Protein tyrosine and serine/threonine kinase 90 368 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02575 Rops-Chr6 46379111 46380621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02575 15 368 Receptor kinase-like Gene Family AT5G07280 38.753 3.98e-71 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Rops6g02575 PK_Tyr_Ser-Thr 2.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02575 - - mtr:11410577 573.548