Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02564 ATGGCTGCTTCCAGTGAAAGGTGGATTGACCGTCTTCAGTTTTCTTCATTGTTCTGGCCTCCCCCACCAGATGGTCAACAAAGAAAGGATCAAATCGCTGCATATGTTGAGTACTTCATTCAGTTTACATCAGAACAATTTGCTGATGATATTGCGGAGTTGATCCGTAATCGTTATCCATCGAAGGAAATTCTTCTCTTTGATGAAGTTCTGGCGACGTTTGTCCTGCATCATCCAGAGCATGGGCATGCAGTTGTACTTCCAATTATTTCATGTATTATTGATGGCACACTGGTCTATGATAAGACTAGTCCTCCATTTGCTTCTTTCATATCATTGGTCTGCCCAACAAGTGAGAACGACTACTCAGAACAATGGGCTCTGGCATGTGGTGAAATTTTGCGTATTTTAACTCATTACAATCGTCCCATTTACAAAATGGAAAGACAGTATGTTGAAACAGAAAGAAGCAGCAGCGGCAGCCATGCAACAACTAGTGACCCTGTTGATGGGAAATCTGTCCATAAGTCTTTGACACAGCAAGAGAAGAAACCTATAAGGCCCTTGTCCCCCTGGATTACGGATATATTGTTGGCTGCACCTGTAGGCATTAGAAGTGACTATTTCCGGTGGTGCAGTGGTGTTATGGGTAAATATGCTGCAGGAGAACTCAAGCCTCCATCAACTGCTTCTTCCCGTAGTTCTGGGAAGCACCCTCAACTGGTGCCTTCAACTCCAAGATGGGCTGTTGCCAATGGTGCTGGTGTTATATTAAGTGTTTGTGATGATGAAGTTGCTCGCAATGAAACTGCTATTTTAACGGCAGCTGCTGTCCCTGCACTTTTGCTTCCTCCTCCAACAACAGCTGTGGATGAGCATCTTGTTGCTGGATTACCAGCTCTAGAGCCATATGCACGTTTATTTCATAGATATTACGCAATTGCTACTCCAAGTGCTACACAAAGACTTCTTCTTGGACTTCTAGAAGCACCCCCATCATGGGCTCCAGATGCACTTGATGCTGCTGTGCAGCTTGTGGAACTTCTTCGAGCTGCTGAAGATTATGCTTCTGGCATAAGGCTTCCCAGAAATTGGATGCATTTGCATTTCTTGCGTGCAATAGGGACTGCAATGTCCATGAGAGCTGGTATAGCTGCTGATGCTGCAGCCGCATTGCTTTTCCGTATACTTTCACAGCCCGCATTACTTTTTCCTCCTCTTAGACAAGTTGATGGAGTTGAAGTTCAGCATGAACCTTTAGGTGGTTATATTTCTTCCTACAAAAAGCAGATAGAAGTTCCTGCAGCTGAAGCCTCTATTGAGGCTACTGCCCAAGGCATTGCATCAATGCTTTGTGCTCATGGTCCAGAGGTTGAATGGAGAATTTGTACCATTTGGGAAGCTGCTTATGGCCTGATTCCTACGAGTTCTTCGGCTGTTGATCTTCCGGAAATTATAGTTGCAACCCCACTACAACCTCCCATGCTGTCATGGAATTTGTACATACCCTTACTTAAGGTTCTGGAGTATCTTCCTCGTGGAAGCCCATCGGAAGCATGTCTTATGAAAATATTTGCTGCTACAGTGGAAGCTATTCTTCAGAGGACATTTCCACCTGAGTCCACAAGAGAACAAAACAGGAAAACAAAATACTTCTTTGGCATTGGTTTGGCCTCTAAAAACCTTGCTGTGGCAGAACTTCGTACTATGGTTCATTCACTTTTCTTAGAATCATGTGCATCTGTAGAGCTTGCTTCACGCCTACTTTTTGTTGTCTTAACTGTCTGCGTCAGTCATGAAGCCCAATTCAATGGAAGCAAGAAGCCAAGAGGTGAAGATAATTATTCAGCTGAGGACATCATTGAGGACTTACAAGCAGTATCTGAAAGCCATAAAGAAAAAAATAGGAAAATGAAGAAGCAAGGTCCTGTAGCAACATTTGATTCTTATGTTCTGGCTGCTGTTTGTGCTCTTGCCTGTGAGCTTCAGTTGTTTCCTTTGCTTTCTCGGGGGAATAATCATTCAGTTTCCAATAATGTGCGAGATATAGCCAAGCATGCTAGACTAAATGGATCTTCCCATGAGTTGCAAAATGGCATAGATTCAGCAATACGCCATACTCACAGAATTTTGGCAATTTTAGAGGCACTATTTTCGTTGAAACCATCTTCTGTTGGCACCCCTTGGAGTTACAGCTCAAATGAGATAGTTGCAGCAGCTATGGTAGCTGCACATGTTTCTGAACTATTTAGACGGTCAAAAGCTTGCATGCATGCTCTTTCTGTTCTGATTCGTTGCAAATGGGACAGTGAAATTCACTCCAGGGCATCATCGTTGTATAATCTCATAGATATTCACAGAAAAGTTGTTGCATCTATAGTAAACAAGGCAGAGCCATTAGAAGCAACCTTGATTCATGCATCTATCCCGGTTTGTGTCAATAATAAAAGACAGAATCGGTGCGAAAACAGTAGCTGCTTTGACCCTGGGCAGACATCTATTGTACCTATGGAAGATTCAGCCCCCTCAAAACTTGATAAATCTGAGAGAACTCCATGTTCAAATGAAGCAGCATCAGGGTGTACCGTGGGTAAAGGTGTCACAAATTTCTCCTTGGATGCTTCTGATCTGGCCAACTTCCTCACAATGGACAGGCACATAGGGTTGAATTGCAATGCGCAAATTTTTCTAAGATCCATGCTGGCAGAGAAACAAGAGTTATGTTTCTCTGTAGTTTCACTACTATGGCACAAGTTGATTGTATCTCCTGAAACACAACCATGTGCAGAAAGCACTTCTGCCCAACAAGGCTGGAGACAGGTTATTGATGCATTATGCAATGTTGTATCAGCCTCACCAACGAAAGCAGCTACAGCAATTGTCCTTCAGGCGGAGAGGGAATTGCAGCCCTGGATTGCCAAGGATGATGATCTAGGTCAGAAGATGTGGAGAATCAATCAGCGGATTGTGAAATTGATAGTCGAACTAATGAGGAATCATGATAGTTCAGAATCATTGGTAATTGTGGCAAGTGCATCAGATTTACTACTTCGAGCCACAGATGGGATGCTGGTTGATGGAGAAGCTTGCACTTTACCACAGCTGGAGCTATTGGAAGCAACAGCTAGAGCAGTACAGCCAGTGCTGGAGTTTGGAGAATCAGGATTGGCTGTGGCAGATGGCCTTTCAAACCTTTTAAAGTGTCGCCTACCAGCTACTATTAGGTGCCTTTCTCATCCAAGTGCACATGTCCGCACTCTGAGCATATCTGTTCTTCGTAACATTGTGCATACTGGTTCAATCAGAGGTGGTCCTAAATCACCGCGAATAAATGGCATCCGCGGTCCCTCTTATCAATACTTAAATTTGGATGTCATTGATTGGCAAGCTGATATAGAAAAATGCTTGACATGGGAAGCTCACAGCAGAATTTCAAATGGATTGTCTATTAAGTTTCTTGATATTGCTGCGAAAGAGTTGGGCTAAACATTAGAGTTTCAGATCCTCAATCGGCCACGACCAACAGCTCCGCCGGCAATCGTCACTCTCTCCAAGAACTCTTTCGCGGCGAAAATGTCTCTGGTGGCAAACGAGGAATTCCAGCACATTCTGCGTGTGCTGAACACCAACGTAGATGGGAAGCAGAAGATCATGTTCGCTCTTACCTCCATCAAGGGTGTTGGTAGGAGATTCGCCAACATGGTTTGCAAGAAGGCTGACGTCGACATGAACAAGAGGGCTGGTGAGTTGAGTGCTGCTGAGTTGGATAATCTGATGACTGTGGTTGCTAACCCAAGGCAATTCAAGATCCCAGATTGGTTCTTGAACAGGAAGAAGGACTACAAGGATGGCAAGTACTCTCAGGTTGTCTCCAATGCTCTTGATATGAAACTCAGGGATGATTTGGAGAGACTCAAGAAAATCAGAAACCACCGTGGTTTGAGGCACTACTGGGGCCTTCGTGTTCGTGGTCAGCATACCAAGACTACTGGTCGCAGGGGTAAAACTGTTGGTGTCTCTAAGAAGCGTTAA 4032 0.4417 MAASSERWIDRLQFSSLFWPPPPDGQQRKDQIAAYVEYFIQFTSEQFADDIAELIRNRYPSKEILLFDEVLATFVLHHPEHGHAVVLPIISCIIDGTLVYDKTSPPFASFISLVCPTSENDYSEQWALACGEILRILTHYNRPIYKMERQYVETERSSSGSHATTSDPVDGKSVHKSLTQQEKKPIRPLSPWITDILLAAPVGIRSDYFRWCSGVMGKYAAGELKPPSTASSRSSGKHPQLVPSTPRWAVANGAGVILSVCDDEVARNETAILTAAAVPALLLPPPTTAVDEHLVAGLPALEPYARLFHRYYAIATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEDYASGIRLPRNWMHLHFLRAIGTAMSMRAGIAADAAAALLFRILSQPALLFPPLRQVDGVEVQHEPLGGYISSYKKQIEVPAAEASIEATAQGIASMLCAHGPEVEWRICTIWEAAYGLIPTSSSAVDLPEIIVATPLQPPMLSWNLYIPLLKVLEYLPRGSPSEACLMKIFAATVEAILQRTFPPESTREQNRKTKYFFGIGLASKNLAVAELRTMVHSLFLESCASVELASRLLFVVLTVCVSHEAQFNGSKKPRGEDNYSAEDIIEDLQAVSESHKEKNRKMKKQGPVATFDSYVLAAVCALACELQLFPLLSRGNNHSVSNNVRDIAKHARLNGSSHELQNGIDSAIRHTHRILAILEALFSLKPSSVGTPWSYSSNEIVAAAMVAAHVSELFRRSKACMHALSVLIRCKWDSEIHSRASSLYNLIDIHRKVVASIVNKAEPLEATLIHASIPVCVNNKRQNRCENSSCFDPGQTSIVPMEDSAPSKLDKSERTPCSNEAASGCTVGKGVTNFSLDASDLANFLTMDRHIGLNCNAQIFLRSMLAEKQELCFSVVSLLWHKLIVSPETQPCAESTSAQQGWRQVIDALCNVVSASPTKAATAIVLQAERELQPWIAKDDDLGQKMWRINQRIVKLIVELMRNHDSSESLVIVASASDLLLRATDGMLVDGEACTLPQLELLEATARAVQPVLEFGESGLAVADGLSNLLKCRLPATIRCLSHPSAHVRTLSISVLRNIVHTGSIRGGPKSPRINGIRGPSYQYLNLDVIDWQADIEKCLTWEAHSRISNGLSIKFLDIAAKELG*TLEFQILNRPRPTAPPAIVTLSKNSFAAKMSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGVGRRFANMVCKKADVDMNKRAGELSAAELDNLMTVVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR* 1344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02564 1342 Hamap 30S ribosomal protein S13 [rpsM]. 1202 1342 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Rops6g02564 1342 MobiDBLite consensus disorder prediction 155 182 - -
Rops6g02564 1342 Gene3D 30s ribosomal protein s13, domain 2 1282 1332 IPR027437 -
Rops6g02564 1342 FunFam 40S ribosomal protein S18 1282 1333 - -
Rops6g02564 1342 PRINTS Protein GIGANTEA signature 203 221 IPR026211 GO:2000028
Rops6g02564 1342 PRINTS Protein GIGANTEA signature 277 295 IPR026211 GO:2000028
Rops6g02564 1342 PRINTS Protein GIGANTEA signature 4 22 IPR026211 GO:2000028
Rops6g02564 1342 PRINTS Protein GIGANTEA signature 250 271 IPR026211 GO:2000028
Rops6g02564 1342 PRINTS Protein GIGANTEA signature 345 365 IPR026211 GO:2000028
Rops6g02564 1342 PRINTS Protein GIGANTEA signature 122 146 IPR026211 GO:2000028
Rops6g02564 1342 PRINTS Protein GIGANTEA signature 509 530 IPR026211 GO:2000028
Rops6g02564 1342 PRINTS Protein GIGANTEA signature 232 250 IPR026211 GO:2000028
Rops6g02564 1342 PRINTS Protein GIGANTEA signature 183 203 IPR026211 GO:2000028
Rops6g02564 1342 PRINTS Protein GIGANTEA signature 326 345 IPR026211 GO:2000028
Rops6g02564 1342 PRINTS Protein GIGANTEA signature 301 321 IPR026211 GO:2000028
Rops6g02564 1342 PRINTS Protein GIGANTEA signature 377 399 IPR026211 GO:2000028
Rops6g02564 1342 PRINTS Protein GIGANTEA signature 449 472 IPR026211 GO:2000028
Rops6g02564 1342 FunFam 40S ribosomal protein S18 1191 1270 - -
Rops6g02564 1342 ProSitePatterns Ribosomal protein S13 signature. 1311 1324 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Rops6g02564 1342 Coils Coil 621 641 - -
Rops6g02564 1342 ProSiteProfiles Ribosomal protein S13 family profile. 1205 1335 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Rops6g02564 1342 SUPERFAMILY S13-like H2TH domain 1203 1342 IPR010979 GO:0003676
Rops6g02564 1342 Gene3D - 1191 1270 - -
Rops6g02564 1342 MobiDBLite consensus disorder prediction 156 175 - -
Rops6g02564 1342 MobiDBLite consensus disorder prediction 224 243 - -
Rops6g02564 1342 PANTHER PROTEIN GIGANTEA 1 1162 IPR026211 GO:2000028
Rops6g02564 1342 Pfam Ribosomal protein S13/S18 1204 1332 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Rops6g02564 1342 MobiDBLite consensus disorder prediction 227 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02564 Rops-Chr6 46252600 46278043 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02564 1191 1342 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 96.053 8.81e-102 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02564 K12124 - gmx:100779044 2051.56