Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02556 ATGACAAAGATAGAAGTCAATTGTCTCTCAGCTGATGGACAAGCCCTTCTTTCTCTTATGTCTGCAGCTGGCCCTGCTGCAAAATCATTACCTTCTGTTCTCTCCTCATGGAACCCTTCAAGCTCAACACCTTGTTCATGGAAGGGCATTACTTGCTCCCCACAAGGTAGAGTCATTTCACTCTCTATCCCAGATACCTTCCTCAATCTTTCCTCTTTACCTCCTCAGCTCTCCTCTTTATCAATGCTGCAACTTCTCAATCTCTCTTCCACTAATATCTCTGGCTCCATCCCACCCTCTTTTGGTCAACTCTTTCATCTTCAACTGCTTGACATCTCCTCAAACTCTCTCACTGGTTCCATTCCTGCTGAACTTGGAAGACTCTCTTCACTTCAATTCCTTTTCTTGAACTCCAACAGATTGACAGGAAGCATTCCTCAACATCTTGCTAACCTCACTTCACTTGAAGTTCTATGCCTCCAAGACAATCTTCTTAATGGATCAATCCCATCACAGTTAGGCTCTTTGACATCTCTGCAGCAGTTTAGGATAGGAGGTAACCCATATCTCACTGGACAAATCCCACCACAGTTAGGCCTACTCACCAATCTCACAATATTTGGTGCGGCTGCCACTGGACTTTCTGGTGCCATTCCCTCTACATTTGGGAACATGATCAGTCTCCAAACGTTAGCACTTTATGATACTGAAATTTCTGGTTCAATACCACCAGAACTTGGGTTGTGTTCTGAGTTGAGAAATCTGTATTTACACATGAATAAGCTCACTGGCTCTATCCCTTCTCAATTAGGTAAGTTACAAAAACTTACTAGCTTGCTTCTTTGGGGCAATGGATTATCTGGGCCAATCCCAGCTGAGCTTTCCAACTGTTCATCACTTGTTATATTTGATGTCTCTTCTAATGAACTCTCTGGTGAAATACCTGGGGACTTTGAGAAGCTAGTGGTTCTGGAACAGCTTCATCTATCAGACAATTCACTCACTGGTAAAATACCATGGCAGTTGAGCAACTGCACAAGCCTTGCCACTGTTCAGCTTGACAAGAATCAGCTATCAGGTACAATTCCATGGCAGGTTGGCAAGTTGAAGTTTTTGCAGAGTTTTTTCTTGTGGGGTAATTCAGTGTCTGGAACCATACCATCCTCTTTTGGAAACTGCTCAGAACTGTATGCACTTGATCTTTCAAGGAACAAACTAACGGGTTCTATCCCAGAAGAAATTTTCAGCTTGAAAAAGCTGAGTAAGCTTCTGCTTCTGGGTAATTCATTAACAGGAAGGCTGCCACCAAGTGTTGCAAATTGCCAGTCTTTAGTGAGGCTGAGGGTTGGAGAAAACCAGCTTTCAGGACAGATTCCTAAAGAGATAGGCCAATTGCAGAATCTGGTGTTTCTTGATTTGTACATGAATCATTTCTCTGGAAGCTTACCGGTGGAGATTGCCAACATCACAGTTCTTGAGCTTTTAGATGTGCATAACAACTACCTCACTGGGGAGATTCCATCTATGATTGGGGAACTTGAAAATCTGGAGCAGCTTGATCTAAGTAGAAACAGTTTGGCAGGTGAAATTCCTTGGAGCTTTGGAAACTTCAGTTATTTGAACAAGCTCATCCTCAACAATAATTTGCTGACAGGATCAATCCCAAAATCCATTAGAAATTTGCAGAAACTAACTCTATTGGATTTGAGTTATAACAACCTCTCTGGTGGCATACCCCATGAGATTGGTTATGTTACAAGCTTAACTATCAGTTTGGACTTGAGCTCAAATGCATTTACAGGAGAAATCCCAGATTCAATGTCTGCTTTGAAACAGTTACAGTCGCTTGATCTTTCTCATAATATGTTTTATGGAGGAATAAAGGTTCTTGGTTCTCTCACTAGTCTCACTTCCCTCAACATCTCCTACAACAGCTTATCAGGTCCTATCCCGGTAACTCCATTCTTCAGAACTATATCTTCAAATTCATATCTTCATAACCCTCATCTATGTCAGTCCATTGATGGGACTACATGTTCTTCAAGAATGGTTAGAAAAAATGGTTTGAAATCTGCAAAAACCATAGCTTTGATCATGATAATTCTAGCCTCCGTTACCATAATTGTCATTGCATCCTGGATTCTAGTAACTCGTAATCACAGATATAAGGTTGAAAAAGCTTTGGGGACATTGGCTTCTACATCAGGAGCTGAGGATTTCTCTTATCCTTGGACTTTCATCCCATTTCAAAAACTAAACTTCAGCATAGATAATATCTTGGATTGCTTGAAGGATGAAAATGTGATTGGAAAGGGTTGCTCTGGTGTTGTGTACAAGGCTGAAATGCCAAATGGGGAGTTGATAGCAGTGAAGAAGCTTTGGAAAGCAAACAAAGCAGATGAAACCGATTGTTTTGCTGCAGAGATTCAGATTCTTGGGTACATTCGGCATAGGAACATTGTGAGGCTCGTAGGTTATTGTTCTAACAGGAGTGTTAAGCTTCTTCTCTATAACTACATCCCAAATGGTAATCTAAGGCAGCTTTTACTAGGGAACAGGAACTTAGACTGGGAAACTAGATACAAGATTGCTGTTGGGTCAGCTCAAGGTCTAGCTTACCTTCATCATGATTGTGTCCCTGCAATTCTTCACAGAGATGTTAAGTGCAATAACATTCTTCTAGATTCCAAATTTGAGGCATGTCTGGCAGATTTTGGTCTTGCAAAGCTAATGAATTCGCCAAATTATCATCAGGCAATGTCCAGAGTTGCTGGTTCCTATGGTTATATTGCCCCAGGCAAGGCTATTTGA 2811 0.4137 MTKIEVNCLSADGQALLSLMSAAGPAAKSLPSVLSSWNPSSSTPCSWKGITCSPQGRVISLSIPDTFLNLSSLPPQLSSLSMLQLLNLSSTNISGSIPPSFGQLFHLQLLDISSNSLTGSIPAELGRLSSLQFLFLNSNRLTGSIPQHLANLTSLEVLCLQDNLLNGSIPSQLGSLTSLQQFRIGGNPYLTGQIPPQLGLLTNLTIFGAAATGLSGAIPSTFGNMISLQTLALYDTEISGSIPPELGLCSELRNLYLHMNKLTGSIPSQLGKLQKLTSLLLWGNGLSGPIPAELSNCSSLVIFDVSSNELSGEIPGDFEKLVVLEQLHLSDNSLTGKIPWQLSNCTSLATVQLDKNQLSGTIPWQVGKLKFLQSFFLWGNSVSGTIPSSFGNCSELYALDLSRNKLTGSIPEEIFSLKKLSKLLLLGNSLTGRLPPSVANCQSLVRLRVGENQLSGQIPKEIGQLQNLVFLDLYMNHFSGSLPVEIANITVLELLDVHNNYLTGEIPSMIGELENLEQLDLSRNSLAGEIPWSFGNFSYLNKLILNNNLLTGSIPKSIRNLQKLTLLDLSYNNLSGGIPHEIGYVTSLTISLDLSSNAFTGEIPDSMSALKQLQSLDLSHNMFYGGIKVLGSLTSLTSLNISYNSLSGPIPVTPFFRTISSNSYLHNPHLCQSIDGTTCSSRMVRKNGLKSAKTIALIMIILASVTIIVIASWILVTRNHRYKVEKALGTLASTSGAEDFSYPWTFIPFQKLNFSIDNILDCLKDENVIGKGCSGVVYKAEMPNGELIAVKKLWKANKADETDCFAAEIQILGYIRHRNIVRLVGYCSNRSVKLLLYNYIPNGNLRQLLLGNRNLDWETRYKIAVGSAQGLAYLHHDCVPAILHRDVKCNNILLDSKFEACLADFGLAKLMNSPNYHQAMSRVAGSYGYIAPGKAI* 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02556 936 Gene3D Ribonuclease Inhibitor 10 168 IPR032675 -
Rops6g02556 936 Gene3D Ribonuclease Inhibitor 459 554 IPR032675 -
Rops6g02556 936 Gene3D Ribonuclease Inhibitor 555 681 IPR032675 -
Rops6g02556 936 PRINTS Leucine-rich repeat signature 513 526 - -
Rops6g02556 936 PRINTS Leucine-rich repeat signature 396 409 - -
Rops6g02556 936 ProSitePatterns Serine/Threonine protein kinases active-site signature. 882 894 IPR008271 GO:0004672|GO:0006468
Rops6g02556 936 Pfam Leucine rich repeat N-terminal domain 10 53 IPR013210 -
Rops6g02556 936 Gene3D Transferase(Phosphotransferase) domain 1 840 933 - -
Rops6g02556 936 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 488 683 - -
Rops6g02556 936 Gene3D Ribonuclease Inhibitor 363 458 IPR032675 -
Rops6g02556 936 Gene3D Ribonuclease Inhibitor 169 264 IPR032675 -
Rops6g02556 936 Gene3D Ribonuclease Inhibitor 265 362 IPR032675 -
Rops6g02556 936 Pfam Leucine rich repeat 372 430 IPR001611 GO:0005515
Rops6g02556 936 Pfam Leucine rich repeat 275 334 IPR001611 GO:0005515
Rops6g02556 936 Pfam Leucine rich repeat 83 141 IPR001611 GO:0005515
Rops6g02556 936 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 739 839 - -
Rops6g02556 936 ProSiteProfiles Protein kinase domain profile. 763 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02556 936 Gene3D Phosphorylase Kinase; domain 1 748 839 - -
Rops6g02556 936 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 188 411 - -
Rops6g02556 936 ProSitePatterns Protein kinases ATP-binding region signature. 769 792 IPR017441 GO:0005524
Rops6g02556 936 SUPERFAMILY L domain-like 351 675 - -
Rops6g02556 936 Pfam Protein kinase domain 765 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02556 936 PANTHER OS01G0750400 PROTEIN 72 158 - -
Rops6g02556 936 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 9 172 - -
Rops6g02556 936 SUPERFAMILY Protein kinase-like (PK-like) 747 932 IPR011009 -
Rops6g02556 936 SMART LRR_typ_2 513 536 IPR003591 -
Rops6g02556 936 SMART LRR_typ_2 128 151 IPR003591 -
Rops6g02556 936 SMART LRR_typ_2 321 345 IPR003591 -
Rops6g02556 936 SMART LRR_typ_2 633 666 IPR003591 -
Rops6g02556 936 SMART LRR_typ_2 152 176 IPR003591 -
Rops6g02556 936 SMART LRR_typ_2 465 488 IPR003591 -
Rops6g02556 936 SMART LRR_typ_2 561 585 IPR003591 -
Rops6g02556 936 SMART LRR_typ_2 273 297 IPR003591 -
Rops6g02556 936 SMART LRR_typ_2 80 104 IPR003591 -
Rops6g02556 936 SMART LRR_typ_2 393 417 IPR003591 -
Rops6g02556 936 SUPERFAMILY RNI-like 86 443 - -
Rops6g02556 936 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 419 487 - -
Rops6g02556 936 SMART serkin_6 763 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02556 936 FunFam Os07g0541700 protein 840 926 - -
Rops6g02556 936 Pfam Leucine Rich Repeat 515 537 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02556 Rops-Chr6 46067839 46072137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02556 6 935 Receptor kinase-like Gene Family AT5G56040 44.947 0.0 743
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops6g02556 Pkinase 6.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02556 - - gmx:100819611 1585.85