Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02548 ATGGCTGCGGCGATTTCTTCACCGATGACTCAGTCTGCGGCTGCGGTTGCTCCGGCGGCAACTGCTCCGCCGATGGCATTTGCGAATGCGTCACTATATGTAGGCGATCTCGAGGGGAATGTGAACGAGTCACAACTTTATGATCTGTTTAGCCAGGTGGCTCAGGTGGTCTCGATTAGGGTTTGTAGGGATCAGACTAGGCGATCCTCTCTCGGTTACGCTTATGTTAACTTTGCCAACGCTCAGGAGGCGGCCAATGCCATGGAGCTCTTGAACTTCACTCCTCTGAATGGGAAACCCATTCGTATTATGTTTTCTCAACGAGATCCAAGCATTCGAAAAAGTGGATATGCCAATGTGTTCATTAAGAACCTGGACACATCAATTGATAACAAGGCATTACATGACACTTTTGCTGCCTTTGGCACTGTACTTTCTTGTAAGGTGGCTGTTGACAGCAGTGGTCAGTCAAAAGGGTACGGTTTTGTACAGTTTGACAACGAAGAGGCTGCCCAGAATGCCATTAAACAGTTGAATGGCATGTTGATAAATGATAAACAAGTCTATGTTGGACTTTTTGTTCGGCACCAGGAAAGGGTTCGATCAAATGGATCACCTAAGTTCACTAATGTGTATGTGAAAAATTTATCTGAAACCTTTACCGATGAGGATCTGAAGCAACTATTTAGCCCCTTTGGTACAATAACTAGTGCAACTGTTATGAAGGATGTGAATGGGAGGTCTAGGTGTTTTGGTTTTGTGAATTTTCAGAGTCCAGATTCAGCAGCTGGTGCAGTTGAGAGGTTAAATGGAACTATTATCAATGATGACAAGGTTTTATATGTGGGGAGAGCTCAGAGGAAAGCAGAAAGAGAGGCTGAGTTAAAATCCAGATTTGAGCAGGAAAAAAATAACAGATATGAGAAATCACAATCTGCTAATTTGTACTTGAAAAATCTTGATGACAGCTTCACTGATGAAAAGTTGAAGGATCTATTTTCCGAGTTTGGAACTATAACATCTTGCAAGGTGATGCTAGATTCATATGGGCATAGCAAGGGTTCTGGTTTCGTGTCATTTTCTACTACTGATGAAGCAACTAAAGCCTTGAATGAAATGAATGGAAAGTTGATTGGACAGAAGCCTCTGTATGTTGCTGTGGCCCAGCGCAAAGAAGATAGGAAGGCTCGTTTGCAGGCTCATTTTGCTCAAATCCGAGCACCTGGTGGAATGACACATCTGCCTGCAGGAATTCCTGGATATCATCCAGGGACACCGAGACTTGCCCCTCAACAGTTGTATTTTGGTCAAGGCACACCTGGCTTCATGCCACCTCAGCATGCTGGTTTTGGTTTCCAACAGCAAATCTTGCCTGGAATGCGGCCTGGTGTTGCACCAAATTTCATTATGCCTTACCACCTTCAGAGACAGGGTCAGCCTGGTCAGAGGATGGGTGTTCGACGAAGTGGAAACCTCCAACCAATGCAGCAAAACCAAATGCCACATCGTAACTCCAACCAAGGGTTTAGGTATATGGCCAACAACCGAAATGGCATGGATCCATCTGTAGTTCCTCAAGGTCTAGTGGGTCAAATGATGCCAATGCCATTTGATGTTTCTGGTGTTACTGCTGCTCCTATTGATAATCAGCGTCCTGGGGCATCTTCTACCACACTTGCCTCAACTTTGGCTTCTGCTACCCCAGAAAATCAGCGAATGATGTTGGGAGAACATCTATATCCTCTTGTTGACCGTCTCACACCAAACCAACATACAGCAAAGGTAACAGGGATGTTGCTGGAAATGGACCAGTCAGAGGTAATACATCTTATTGAGTCTCCTGAGGACCTGAAGATAAAGGTGTCTGAGGCAATGCAGGTCCTTCATGAAGCTGCATCAGGTTCTGAAGTTGGTGATCAGCTTGGCTCTTTGTCATTGAATGAATGA 1947 0.4489 MAAAISSPMTQSAAAVAPAATAPPMAFANASLYVGDLEGNVNESQLYDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFANAQEAANAMELLNFTPLNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGTVLSCKVAVDSSGQSKGYGFVQFDNEEAAQNAIKQLNGMLINDKQVYVGLFVRHQERVRSNGSPKFTNVYVKNLSETFTDEDLKQLFSPFGTITSATVMKDVNGRSRCFGFVNFQSPDSAAGAVERLNGTIINDDKVLYVGRAQRKAEREAELKSRFEQEKNNRYEKSQSANLYLKNLDDSFTDEKLKDLFSEFGTITSCKVMLDSYGHSKGSGFVSFSTTDEATKALNEMNGKLIGQKPLYVAVAQRKEDRKARLQAHFAQIRAPGGMTHLPAGIPGYHPGTPRLAPQQLYFGQGTPGFMPPQHAGFGFQQQILPGMRPGVAPNFIMPYHLQRQGQPGQRMGVRRSGNLQPMQQNQMPHRNSNQGFRYMANNRNGMDPSVVPQGLVGQMMPMPFDVSGVTAAPIDNQRPGASSTTLASTLASATPENQRMMLGEHLYPLVDRLTPNQHTAKVTGMLLEMDQSEVIHLIESPEDLKIKVSEAMQVLHEAASGSEVGDQLGSLSLNE* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02548 648 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 30 628 IPR006515 GO:0003723
Rops6g02548 648 CDD RRM3_I_PABPs 208 288 - -
Rops6g02548 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
Rops6g02548 648 Gene3D - 296 402 IPR012677 -
Rops6g02548 648 Gene3D - 194 295 IPR012677 -
Rops6g02548 648 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 555 633 IPR002004 GO:0003723
Rops6g02548 648 FunFam Polyadenylate-binding protein 23 118 - -
Rops6g02548 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 390 IPR000504 GO:0003723
Rops6g02548 648 SUPERFAMILY PABC (PABP) domain 493 633 IPR036053 GO:0003723
Rops6g02548 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Rops6g02548 648 PANTHER RNA BINDING PROTEIN 29 92 - -
Rops6g02548 648 Pfam Poly-adenylate binding protein, unique domain 563 628 IPR002004 GO:0003723
Rops6g02548 648 Gene3D - 19 117 IPR012677 -
Rops6g02548 648 SMART rrm1_1 314 386 IPR000504 GO:0003723
Rops6g02548 648 SMART rrm1_1 119 191 IPR000504 GO:0003723
Rops6g02548 648 SMART rrm1_1 210 283 IPR000504 GO:0003723
Rops6g02548 648 SMART rrm1_1 31 104 IPR000504 GO:0003723
Rops6g02548 648 FunFam Polyadenylate-binding protein 119 192 - -
Rops6g02548 648 SUPERFAMILY RNA-binding domain, RBD 30 196 IPR035979 GO:0003676
Rops6g02548 648 Coils Coil 285 305 - -
Rops6g02548 648 FunFam Polyadenylate-binding protein 551 634 - -
Rops6g02548 648 Gene3D - 118 192 IPR012677 -
Rops6g02548 648 CDD RRM2_I_PABPs 116 191 IPR045305 -
Rops6g02548 648 FunFam Polyadenylate-binding protein 296 401 - -
Rops6g02548 648 CDD RRM4_I_PABPs 314 390 - -
Rops6g02548 648 SMART rrm2_1 119 191 IPR003954 GO:0003676
Rops6g02548 648 SMART rrm2_1 31 104 IPR003954 GO:0003676
Rops6g02548 648 SMART rrm2_1 314 386 IPR003954 GO:0003676
Rops6g02548 648 SMART rrm2_1 210 282 IPR003954 GO:0003676
Rops6g02548 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 278 IPR000504 GO:0003723
Rops6g02548 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 102 IPR000504 GO:0003723
Rops6g02548 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 383 IPR000504 GO:0003723
Rops6g02548 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 188 IPR000504 GO:0003723
Rops6g02548 648 Gene3D - 553 633 - -
Rops6g02548 648 SMART poly_2 567 631 IPR002004 GO:0003723
Rops6g02548 648 FunFam Polyadenylate-binding protein 199 295 - -
Rops6g02548 648 SUPERFAMILY RNA-binding domain, RBD 208 393 IPR035979 GO:0003676
Rops6g02548 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 287 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02548 Rops-Chr6 46008871 46013221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02548 1 628 Eukaryotic Initiation Factors Gene Family AT1G22760 57.054 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02548 K13126 - gmx:100783163 1102.81