Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02540 ATGGGTGCTGCTTCAGAATCTGCTTCTGCTGAGTGCTTCAGCCAGATGATGTCCTCGATGCCAGGTTTTCGGTTCCATCCCACGGATGAGGAGCTTGTCGTGTACTATCTGAAGCGGAAGATTTGTGGGAAGAAACTGAAGTTCAACGTGATTCGTGAAACTGATGTGTACAAGTGGGATCCTGAGGATTTACCTGGGCAATCTGTACTGAGAACCGGAGATAGACAATGGTTCTTTTTCTGTCATAGAGATAGGAAGTATCCTAACGGTGGAAGGTCTAACCGAGCTACAAGACATGGGTACTGGAAAGCAACAGGAAAAGATCGGAATATAACATGCAATTATCGAGCTGTTGGAGTGAAAAAGACACTGGTTTTCTATAAAGGCAGAGCTCCTAATGGTGAGCGGACTGATTGGGTTATGCATGAATACACCATGGATGAAGAGGAGCTTAAGAGATGCCAGGGTGTTAAGGATTATTATGCACTTTACAAGGTCTACAAGAAAAGTGGACCTGGTCCTAAAAATGGTGAACAGTATGGTGCACCATTTAAAGAAGAAGAATGGGTAGATGACGATGTTGTAGATTTTAATATTAACTCAGCTGACCATGAGGCTCCAAATACTGTCACTGACACTGTTAATGATCAGCCACAGCTTTTGCTTGATGATGAAATTGACGAGATCATTAGAGAAATTTGGGTAGATGAGCCTTTCCTTGATCAACATGTGAATGGTTATCTAGACTTTCCTCAGGTTTTTGCTGAAGAAACACAAAGTACGGTCGTGGGTCAATTCTCTGAGGTCGTGATATTCCCTGAGCCAAGTGGAAATTTTCAGTCTAGCAGTCAGCATCATGATGTGCAGCCCAGCTTTGACTTCAACCAGTCAGTTACTTCTCACTTGCATGTTTCTGAAGCACCTGAGGTCACTTCCGTTCCCAACATTCAAAGAGAGGAGGGACTTCACTTTCAAGAGGATGGCTTCTTGGAAATTAATGATCTCATTGATGATGAACCTGAATTGTCAAATGTGGAAAATCCTGTGGAGAACCTGCAGTTTGAAGATGGGTTAAGTGAGCTTGATCTGTACCAAGATGCAGAGATGTTTCTTCGTGACTTGGGGCCAATTACTCATGAAACAATTTCACATATATATATGAATACTGTTGACGGCAATATTGAAAATCAAAATTACCAGTTGCTGTCCAATCCAGAGGATGGTAACCAAACTGTTGGTGAATTCTGGATACATGATGAAAGAAACACTCCGAGTCCAGCCGAAGGCTATGCTGGTTCTTTCTCTCTACCAACCTCAGGTGTTGTATGTGACTCTGTCGACTTTCCTACTCAAGGCAATCAAAGTAGCACCGTGGAAGATGTTTCTACAAGTAGATTCTCCTCTGCTCTCTGGTCCTTTGTTGAGTCTATACCTACCACTCCTGCATCAGCTGCTGAAAGTGCTTTGGTGAACAGGGCTTTGAATAAAATGTCTAGCTTCAGCAGGCTGAAGATCAAGCACACCAATGTTGCTGCAGGTAAAGACACTGCAACTTTGAAGAGAGCAGGCTTAAAGGGAGTTTCATTCCTTTTCTTCCCGATTCTTATTGCTTTATGTGCTATCTTGTGGGTTTCTATCGGAAATTTAAGACTATTAGGGAGATGCATCTCTCCTTGA 1677 0.4281 MGAASESASAECFSQMMSSMPGFRFHPTDEELVVYYLKRKICGKKLKFNVIRETDVYKWDPEDLPGQSVLRTGDRQWFFFCHRDRKYPNGGRSNRATRHGYWKATGKDRNITCNYRAVGVKKTLVFYKGRAPNGERTDWVMHEYTMDEEELKRCQGVKDYYALYKVYKKSGPGPKNGEQYGAPFKEEEWVDDDVVDFNINSADHEAPNTVTDTVNDQPQLLLDDEIDEIIREIWVDEPFLDQHVNGYLDFPQVFAEETQSTVVGQFSEVVIFPEPSGNFQSSSQHHDVQPSFDFNQSVTSHLHVSEAPEVTSVPNIQREEGLHFQEDGFLEINDLIDDEPELSNVENPVENLQFEDGLSELDLYQDAEMFLRDLGPITHETISHIYMNTVDGNIENQNYQLLSNPEDGNQTVGEFWIHDERNTPSPAEGYAGSFSLPTSGVVCDSVDFPTQGNQSSTVEDVSTSRFSSALWSFVESIPTTPASAAESALVNRALNKMSSFSRLKIKHTNVAAGKDTATLKRAGLKGVSFLFFPILIALCAILWVSIGNLRLLGRCISP* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02540 558 SUPERFAMILY NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
Rops6g02540 558 Gene3D NAC domain 28 171 IPR036093 GO:0003677|GO:0006355
Rops6g02540 558 Pfam No apical meristem (NAM) protein 21 145 IPR003441 GO:0003677|GO:0006355
Rops6g02540 558 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Rops6g02540 558 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 280 - -
Rops6g02540 558 FunFam Nac domain-containing protein 86 28 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02540 Rops-Chr6 45909400 45913714 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02540 5 556 NAC Transcription Factor Family AT1G34190 43.220 7.57e-138 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops6g02540 NAM 1.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02540 - - gmx:100794925 869.381