Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02538 ATGGCCTCCTCTCAGTCCCAGCATCGCTGCGTTTTTGTTGGGAATATACCGTATGATGCCACAGAGGAACAACTTATTGAAATCTGCCAGGAGGTCGGACCTGTAGTCTCATTCAGATTAGTTATTGACAGAGAAACTGGGAAACCAAAAGGTTATGGGTTCTGTGAGTATAAAGATGAAGAGACAGCTTTAAGTGCTCGTCGAAATCTTCAGGGTTATGCAATTAATGGGCGGCAATTACGTGTTGATTTTGCTGAAAATGATAAAGGGAATGATAGAAATAGAGAACAGGGTCGTGGTGGGCCTGGAATGACAGCAAATGTTGATCCTCAGAAACAAGTAGGCATCCCAGCTGTCCATGGGGAAGCTGTTCGGCATCAACCTATTGGTCTTCATATTGCCATAACAGCTGCAGCTGTCATGACAGAAGCTCTAGGTGGTGCTCAGTCTGGCATCCAGTCAAATCAAAATGGTTTGCAGAGTCAGTCAGCATTGGCACATGATCCTTTAACTCTGCATCTGGCCAAAATGTCCAGGAGTCAGCTGATAGAGATTATCTCTGAGCTCAAGGGAATGGCTGCACGCAACAAGGAACTGGCTCACCAGCTGTTGCTTTCAAGGCCACAGTTGCCCAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGAATGGTGACCTCACAAGTGTTACAAATGCCAAACCTTAGAATGGTTTCAGATCAGACCTCACAGTCTTTAATGAATGAAGGCCACCTGGGTCAGCCAGCATTGGTTCAAACTCTGTCTGGCCTACCTCCTTATGGACAGAGCAAGTTGCAGTCTGGTTTGACACCTTATGTTCAAGAAGGCCAAGTAAGCACCATACCTCATAATCCTTTGGCTCCTAATCAATTAACTTCACATCCAAAGCCTCCAGTTCAGCCTCGAATTCCCCTTCAACATTATCCAAGCAACCATGTTGTACAGCTGGGAACAATGTCAGGGCAGTCTAATTTAGCGCTTCCTTCTATGCGTCCCCGGTCTTTGGGAAGTTTGTCTGTTAGGCCTCCAATTCAACCAGCAACTTCAATTGCTTCGAACCAGCAAATGCATGCCCCTTTGCTACAGCATTCAGCACATGTTGGAAGCTCAACTGTGGGACATAATATTCAAATGGTTCGTCCAGATGCAAGCTTTCAGCCTGGCCCCTCCATATCATCAGATATTTCTCAGTTAATCAGTAAGGAAGGTGATAGATCTTCTAAAGTTTTCGAGGATTTAAATTGGGCCAAGAGTAGTAGTACATATTCAAAGATGCCTTTGGGAGTAGAGAAAACAAACATGGTTCGTGATCTTTCAGAAACCATTACTCGCCCGTCAAAGCTCATGAGATTGGATGAGGGAAGGAGCACCTCTATTTCTACAGGGATTTCAGATGTGTCTGTCACCAGTGGATCTTCCAATGTTCTTGGAAGTAGCTCATTACCTGTACCTGCAGCTCCTAAAGCAGAAGTGCAATACGCTGAGCAACAATCTTCTCAGCCCCAGCTACCACCTGATGTGGAGTCTGTTTTACTGCAACAAGTGTTGAATCTAACACCAGAGCAATTGAGTTCCTTGCCACCAGAGCAGCAACAACAGGTCATTCAGCTCCAGCAGGCTCTTCGGCGAGATCAGATGCAGCCCTCATAA 1668 0.4568 MASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYAINGRQLRVDFAENDKGNDRNREQGRGGPGMTANVDPQKQVGIPAVHGEAVRHQPIGLHIAITAAAVMTEALGGAQSGIQSNQNGLQSQSALAHDPLTLHLAKMSRSQLIEIISELKGMAARNKELAHQLLLSRPQLPKALFQAQIMLGMVTSQVLQMPNLRMVSDQTSQSLMNEGHLGQPALVQTLSGLPPYGQSKLQSGLTPYVQEGQVSTIPHNPLAPNQLTSHPKPPVQPRIPLQHYPSNHVVQLGTMSGQSNLALPSMRPRSLGSLSVRPPIQPATSIASNQQMHAPLLQHSAHVGSSTVGHNIQMVRPDASFQPGPSISSDISQLISKEGDRSSKVFEDLNWAKSSSTYSKMPLGVEKTNMVRDLSETITRPSKLMRLDEGRSTSISTGISDVSVTSGSSNVLGSSSLPVPAAPKAEVQYAEQQSSQPQLPPDVESVLLQQVLNLTPEQLSSLPPEQQQQVIQLQQALRRDQMQPS* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02538 555 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Rops6g02538 555 Gene3D - 150 232 - -
Rops6g02538 555 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Rops6g02538 555 Pfam Transcription termination and cleavage factor C-terminal 517 549 IPR026896 GO:0031124
Rops6g02538 555 FunFam Cleavage stimulating factor 64 2 118 - -
Rops6g02538 555 Gene3D - 511 554 IPR038192 -
Rops6g02538 555 Pfam Hinge domain of cleavage stimulation factor subunit 2 163 230 IPR025742 -
Rops6g02538 555 CDD RRM_CSTF2_RNA15_like 9 85 - -
Rops6g02538 555 FunFam Related to Cleavage stimulation factor 508 550 - -
Rops6g02538 555 MobiDBLite consensus disorder prediction 455 487 - -
Rops6g02538 555 Gene3D - 1 113 IPR012677 -
Rops6g02538 555 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 551 - -
Rops6g02538 555 MobiDBLite consensus disorder prediction 85 110 - -
Rops6g02538 555 FunFam Cleavage stimulating factor 64 157 232 - -
Rops6g02538 555 SUPERFAMILY RNA-binding domain, RBD 5 104 IPR035979 GO:0003676
Rops6g02538 555 SMART rrm1_1 10 83 IPR000504 GO:0003723
Rops6g02538 555 MobiDBLite consensus disorder prediction 459 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02538 Rops-Chr6 45897692 45905882 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02538 11 149 Eukaryotic Initiation Factors Gene Family AT1G22760 27.338 1.17e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02538 K14407 - gmx:100794399 860.522