Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02534 ATGGCCCAAACCTACGGCCCAATCATGTCCCTCCGTTTCGGCTCCGTCACCGTCGCCGTCGCCTCCTCCCCCACCGCCGCCCAAGAAATCCTCCAAAAAAACGACCAATCCTTCGCCAACCGCCCCATCCCCGAATCCGTCGCTGCCCAGCCCAACGTCGGCGATACCCTGGCCTGGGCCCCCGCCGACCACCGGTGGCGCAACCGCCGCCGTATCTGCACCACGCAGATATTCACAAACCAACGCCTCGACCTACTCCAACACCTCCGGCACCGGAAAGTTCAGCAACTGGTGCAACACCTTCACAAGCAAGCTTCAAAGAGAACAACAGTGGACATAGGAGAACTGGCGTTCGCAACCATGCTGAACTTGGTGTCGAACACGGTGTTCTCTGAGGACCTTGTGGACCCTGAGTTTCAGAGCGCCGGCGAGTTCAAGGATCTGGTGTGGCGGATCATGGAGGATGCTGGGAAAGTGAACCTCTCGGACTATTTTCCGGTGTTGAAGAGTTTGGATTTGCAGCGCGTAAAGAGGCACGTGAAGGTTTCTTACGAGAGGTTGCATGAAATTTTTGAGCACATGATTAAAAAACGTATCAAAGACAGAGAGAGTTTGAAAGGTAGTGAGAGTGGTGATTTCTTGGATGTGTTGCTTGATCATAGTCAACAAGGAGAGGGCTCTGTTTTCACTGTTGAAAGCATCAAGCCATTGATTCTGGATCTTTTTATTGCGGGAAGTGACACTTCAGGATCAACAACAGAATGGGCAATGGCAGAGCTTCTACGCAATCCAGAAGTAATGAAGAAAGCAAGAAAAGAACTGATCCAAGTAATTGGCACCTCCAATGAAGTCAAAGAATCAGATATCCCTAGACTTCCATACATCCAAGCAATAGTGAAAGAAACCCTTAGGCTTCATCCACCAGTACCCCTTCTATTACCCTATGTTGCAGGAAATGATGTTGAAGTAAAAGGGTACACAATTCACAAAGGAAACCAAGTTCTTATAAATGCATGGTCCATTGGAAGAAACCCTGAGTTTTGGGATGATCCATTGTTGTTTAACCCTGAAAGGTTTCTCAGTTCCAACATAGATTTCAAAGGCAGGGATTTTGAGTATGTACCTTTTGGTGCTGGTAGGAGAATTTGCCCTGGTTTGCCACTTGCTAATAGGATGATTACTTTGATGTTGGCTGCATTGTTACATTCTTTTGAGTGGGAGCTTCCTGAGGGTGTCACTCCTGAAAAGCTTGACATGAGTGAGCAGTATGGAATAACATTGAAGAAGCTCACTCCTCTTTGTGCTGTTCCAATATCAGTATGA 1323 0.4792 MAQTYGPIMSLRFGSVTVAVASSPTAAQEILQKNDQSFANRPIPESVAAQPNVGDTLAWAPADHRWRNRRRICTTQIFTNQRLDLLQHLRHRKVQQLVQHLHKQASKRTTVDIGELAFATMLNLVSNTVFSEDLVDPEFQSAGEFKDLVWRIMEDAGKVNLSDYFPVLKSLDLQRVKRHVKVSYERLHEIFEHMIKKRIKDRESLKGSESGDFLDVLLDHSQQGEGSVFTVESIKPLILDLFIAGSDTSGSTTEWAMAELLRNPEVMKKARKELIQVIGTSNEVKESDIPRLPYIQAIVKETLRLHPPVPLLLPYVAGNDVEVKGYTIHKGNQVLINAWSIGRNPEFWDDPLLFNPERFLSSNIDFKGRDFEYVPFGAGRRICPGLPLANRMITLMLAALLHSFEWELPEGVTPEKLDMSEQYGITLKKLTPLCAVPISV* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02534 440 CDD CYP76-like 2 437 - -
Rops6g02534 440 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 376 385 IPR017972 GO:0005506|GO:0016705
Rops6g02534 440 PRINTS P450 superfamily signature 244 261 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02534 440 PRINTS P450 superfamily signature 383 394 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02534 440 PRINTS P450 superfamily signature 297 308 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02534 440 PRINTS P450 superfamily signature 374 383 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02534 440 Gene3D Cytochrome P450 1 433 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02534 440 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 1 439 - -
Rops6g02534 440 PRINTS E-class P450 group I signature 2 21 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02534 440 PRINTS E-class P450 group I signature 373 383 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02534 440 PRINTS E-class P450 group I signature 26 47 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02534 440 PRINTS E-class P450 group I signature 296 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02534 440 PRINTS E-class P450 group I signature 253 279 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02534 440 PRINTS E-class P450 group I signature 383 406 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02534 440 PRINTS E-class P450 group I signature 337 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02534 440 PRINTS E-class P450 group I signature 233 250 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02534 440 FunFam Cytochrome P450 76C4 1 436 - -
Rops6g02534 440 Pfam Cytochrome P450 2 429 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02534 440 SUPERFAMILY Cytochrome P450 1 436 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02534 Rops-Chr6 45882214 45885555 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02534 1 438 Cytochrome P450 AT2G45570 46.622 4.20e-140 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02534 - - vra:106769993 701.434