Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02531 ATGGAGAGAAAGTTCCGGGCTTTAGCTTTCGTTTGTTGGGTCTTGTTGGTTCATCCACTATGGCTGATTGCTGCTAACATGGAAGGTTTAACTGATCAGATGGAATCATTATTGTTGTTATTATTTTTGGGTAGAACTAGTCCTCAGAGATTTTACCTCTTGACTCATGTAGTACCTTTTGAAGGCAATGCCTTTTCACTGACTATCATATCAGGTGCTCTGCATATGGGTTATGCTTTCTGCAATTCAAACCAAGTGCAATCTTTAACTGCTTTATCCTTCAGTGTTGCTGGTGGAGACGATCATTGGTGTGGATCTGATATGCAAGTGTATTCTGATCTTCACAGTGATGCTTTACATAGCCTGAGGACAAATTTACAGGATCCTAACAATGTTTTGCAAAGTTGGGATCCTACACTTGTCAATCCGTGCACATGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTTGATCTGGGAAATGCTGCTTTGTCTGGTCAACTTGTTCCACAGCTTGGGCAACTCAAGAATTTGCAGTATTTGGAACTTTACAGCAATAACATTACTGGCCCTATTCCAAGTGACCTGGGGAATCTTACTAACCTTGTGAGCTTGGATCTGTACCTAAACCGTTTCACTGGCCCTATTCCAGATTCATTGGGCAAGTTGTCAAAATTGCGTTTCCTCCGGCTTAACAACAACAGCCTGGTGGGTCCTATTCCCATGACTCTGACTAATATTTCTTCTCTCCAAGTTCTGGATTTGTCTAATAACCGTCTCTCAGGTGTGGTTCCTGATAATGGCTCCTTCTCATTATTCACTCCCATCAGTTTTGCGAACAACTTGGATCTATGTGGACCAGTCACTGGGCACCCTTGTCCAGGCTCTCCTCCATTTTCTCCTCCTCCCCCTTTTGTCCCTCCGCCCCCAATTTCTGCCCCAGGAGGTAATAGTGCCACTGGGGCAATAGCTGGAGGAGTTGCTGCAGGTGCTGCTCTGTTATTTGCGGCACCGGCAATTGCATTTGCATGGTGGCGTCGAAGGAAACCACAAGAATTTTTCTTTGATGTGCCTGCTGAAGAGGATCCTGAAGTCCATCTTGGGCAACTTAAGAGGTTCTCATTACGAGAACTGCAAGTTGCAACAGATAGTTTCAGCAATAAGAACATTCTTGGGAGGGGAGGATTCGGTAAGGTGTACAAAGGACGCTTGGCAGATGGTTCATTGGTTGCTGTCAAAAGATTGAAAGAGGAGCGCACACCTGGGGGGGAGCTTCAGTTTCAGACTGAAGTAGAGATGATCAGCATGGCTGTACATAGAAATCTCCTCCGATTACGAGGGTTCTGTATGACACCAACGGAAAGGTTACTTGTTTACCCCTACATGGCCAATGGAAGTGTTGCCTCGTGCCTAAGAGAGCGTTCTGCACATCAAGAACCCCTAGATTGGCCAACAAGGAAAAGAATAGCTTTGGGATCAGCAAGGGGTCTTTCATATTTGCATGATCATTGTGACCCAAAGATTATTCATCGTGATGTTAAAGCTGCAAACATATTGTTAGATGAGGAGTTTGAGGCTGTTGTTGGGGACTTTGGTTTGGCAAAACTAATGGATTACAAGGACACCCATGTGACAACTGCTGTACGGGGCACCATTGGGCATATAGCTCCAGAGTACCTGTCTACCGGTAAATCTTCAGAGAAAACTGATGTTTTTGGTTATGGTATCATGCTTCTGGAGCTGATCACTGGACAAAGAGCTTTTGACCTTGCTCGGCTCGCAAATGATGATGATGTTATGCTGCTTGATTGGGTAAAAGCACTTCTGAAGGAGAAAAAGCTTGAAATGTTGGTGGATCCTGATCTACATAACAACTACATAGAAGCTGAGGTAGAACAGTTAATCCAGGTTGCACTGCTATGCACACAAGGTTCCCCTATGGACCGACCGAAGATGTCAGAAGTGGTGAGAATGCTTGAAGGTGATGGGTTGGCAGAAAGATGGGATGAGTGGCAAAAAGTGGAAGTTCTACGCCAGGAAGTGGAGCTGGCCCCTCATCCCAATTCTGATTGGATTGTGGACTCCACTGAAAATCTACATGCAGTTGAATTATCTGGTCCAAGGTGA 2136 0.4476 MERKFRALAFVCWVLLVHPLWLIAANMEGLTDQMESLLLLLFLGRTSPQRFYLLTHVVPFEGNAFSLTIISGALHMGYAFCNSNQVQSLTALSFSVAGGDDHWCGSDMQVYSDLHSDALHSLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGQLVPQLGQLKNLQYLELYSNNITGPIPSDLGNLTNLVSLDLYLNRFTGPIPDSLGKLSKLRFLRLNNNSLVGPIPMTLTNISSLQVLDLSNNRLSGVVPDNGSFSLFTPISFANNLDLCGPVTGHPCPGSPPFSPPPPFVPPPPISAPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERSAHQEPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKALLKEKKLEMLVDPDLHNNYIEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEVELAPHPNSDWIVDSTENLHAVELSGPR* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02531 711 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 111 673 - -
Rops6g02531 711 FunFam Somatic embryogenesis receptor kinase 1 357 464 - -
Rops6g02531 711 ProSiteProfiles Leucine-rich repeat profile. 252 273 IPR001611 GO:0005515
Rops6g02531 711 Pfam Protein kinase domain 389 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02531 711 ProSitePatterns Serine/Threonine protein kinases active-site signature. 511 523 IPR008271 GO:0004672|GO:0006468
Rops6g02531 711 Gene3D Ribonuclease Inhibitor 113 298 IPR032675 -
Rops6g02531 711 FunFam Somatic embryogenesis receptor kinase 1 111 298 - -
Rops6g02531 711 Gene3D Phosphorylase Kinase; domain 1 357 464 - -
Rops6g02531 711 SMART serkin_6 388 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02531 711 ProSitePatterns Protein kinases ATP-binding region signature. 394 416 IPR017441 GO:0005524
Rops6g02531 711 SUPERFAMILY Protein kinase-like (PK-like) 367 663 IPR011009 -
Rops6g02531 711 SUPERFAMILY L domain-like 117 277 - -
Rops6g02531 711 Gene3D Transferase(Phosphotransferase) domain 1 465 682 - -
Rops6g02531 711 FunFam Somatic embryogenesis receptor-like kinase 1 465 682 - -
Rops6g02531 711 Pfam Leucine rich repeat N-terminal domain 117 152 IPR013210 -
Rops6g02531 711 Pfam Leucine Rich Repeat 252 269 IPR001611 GO:0005515
Rops6g02531 711 ProSiteProfiles Protein kinase domain profile. 388 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02531 Rops-Chr6 45770626 45777778 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02531 112 711 Receptor kinase-like Gene Family AT1G34210 91.833 0.0 1028
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Rops6g02531 Pkinase 5.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02531 K13418 - gmx:100789884 1088.17