Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02520 ATGGCCGGAAATCCCGCACCAACTACCTCCTCCGTCTCATCTCACGAGAATTTGAATTTCTCGCCGGATTTCCCGAGTCGAATCCCGCTGAGTTCCGATCAGGTCAAATACTGCACCGAAGCACTCACCTTGTTGAGGGAGAAGCTCCGCACTCCTCACACCATCTCCCAAGAGTTCGCTCTCTTGCAGGCGAACAGGATGACACCGAGTGAGATGAGAAGAAGATGCAGCGTTGCTATCGATGCCGTCAATCTGAGCAAAAATCGATATAGAGACGTGTTACCATTTGACAATAGTAGGGTTGTTCTCAAATCAAGTACTGATTATAGACCTGAAGCACTGGGTTATATCAATGCAAACTTAGTCTCGACCTCTTCCCCTGGAAGGATATCTCAGTTTATAGCCACACAAGGTCCACTGCCTCACACTTATGAGGATTTCTGGGAAATGATTATGCAATATCACTGCCCTGCAATTGTCATGCTTACTAGGTTGGTCGACAATTACAAGATGGTGAAGTGTGGAGATTATTTTCAAGCTGAGGATGGACCTAGAGAATTTGGAAATATTATTGTCACCAGTAAATGGATTAAATCTACTGAATCTTCGCTGGTGCTGCGCCATTTAGAGGTGAACCATAGAGAGGTAGAAGATACACCATTATCAGTTTTGCATATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCAAGAGATACATCTGCTGTGCGTGAAATTTTGAAAAGACTATACCATTTACCACCTGACCTTGGCCCGATAGTGGTGCACTGCAGTGCAGGTATTGGTAGAACTGGAACATACTGCACAATTCACAACACAATTCAGAGAATACTTGCTGGTGATATGTCTGCTGTAGATATTGCTAACACAATAGCTGTGTTCAGGTCCCAGCGTATTGGAATGGTTCAGACCCAGGATCAGTACATTTTCTGCTATGAAGTTATCATAGATGAACTGGAAGACCTTGTATCTCAACAGTAA 1002 0.4421 MAGNPAPTTSSVSSHENLNFSPDFPSRIPLSSDQVKYCTEALTLLREKLRTPHTISQEFALLQANRMTPSEMRRRCSVAIDAVNLSKNRYRDVLPFDNSRVVLKSSTDYRPEALGYINANLVSTSSPGRISQFIATQGPLPHTYEDFWEMIMQYHCPAIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIIVTSKWIKSTESSLVLRHLEVNHREVEDTPLSVLHIQYPEWPDHGVPRDTSAVREILKRLYHLPPDLGPIVVHCSAGIGRTGTYCTIHNTIQRILAGDMSAVDIANTIAVFRSQRIGMVQTQDQYIFCYEVIIDELEDLVSQQ* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02520 333 FunFam Tyrosine-protein phosphatase non-receptor type 12 32 333 - -
Rops6g02520 333 Gene3D Protein tyrosine phosphatase superfamily 31 327 IPR029021 -
Rops6g02520 333 CDD PTPc_plant_PTP1 116 320 - -
Rops6g02520 333 ProSiteProfiles PTP type protein phosphatase domain profile. 55 325 IPR000242 GO:0004725|GO:0006470
Rops6g02520 333 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 244 316 IPR000387 GO:0016311|GO:0016791
Rops6g02520 333 PRINTS Protein tyrosine phosphatase signature 292 307 IPR000242 GO:0004725|GO:0006470
Rops6g02520 333 PRINTS Protein tyrosine phosphatase signature 115 122 IPR000242 GO:0004725|GO:0006470
Rops6g02520 333 PRINTS Protein tyrosine phosphatase signature 221 238 IPR000242 GO:0004725|GO:0006470
Rops6g02520 333 PRINTS Protein tyrosine phosphatase signature 259 277 IPR000242 GO:0004725|GO:0006470
Rops6g02520 333 PRINTS Protein tyrosine phosphatase signature 133 153 IPR000242 GO:0004725|GO:0006470
Rops6g02520 333 PRINTS Protein tyrosine phosphatase signature 308 318 IPR000242 GO:0004725|GO:0006470
Rops6g02520 333 Pfam Protein-tyrosine phosphatase 84 323 IPR000242 GO:0004725|GO:0006470
Rops6g02520 333 ProSitePatterns Tyrosine specific protein phosphatases active site. 262 272 IPR016130 GO:0016311|GO:0016791
Rops6g02520 333 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 44 327 - -
Rops6g02520 333 SMART ptp_7 222 324 IPR003595 -
Rops6g02520 333 SMART PTPc_3 54 327 IPR000242 GO:0004725|GO:0006470
Rops6g02520 333 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 38 327 IPR029021 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02520 33 331 Protein tyrosine phosphatase (PTP) family AT1G71860 68.562 4.51e-162 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02520 - - gmx:548044 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02520 6 45664361 45671146 Rops6g02520 6 45664361 45671146 ECH