Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02518 ATGATGGACTCTCTCTCTACCACCAAACACAACAATCACACCAAGCCTTCTTCTCTTCATGTAGAGGCTCCTCCACTGGAGCCAAGCCCTCTACGTAAGATCATCGTGGTGGCGTCCGTCGCCGCCGGGGTTCAATTCGGGTGGGCCCTACAACTCTCTCTTCTCACCCCATATGTTCAGTTGCTGGGTATACCTCATGAATTGTCCTCCATCATCTGGCTCTGCGGCCCAATCTCTGGTTTAGTGGTCCAACCCATTGTTGGTTACCACAGCGACCGTTGCACCTCCCGCTTCGGCCGTCGCCGTCCATTCATCGCCTCCGGAGCACTCGCCGTCGCCATCGCTGTCTTCCTGATCGGTTACGCCGCCGACCTCGGCCACATGTTCGGCGATTCACTCGCCAAGAAGGTTCGCCCTCGAGCCATCACCATCTTCGTCATCGGCTTCTGGATCCTCGACGTGGCCAACAACATGCTCCAGGGACCATGCCGTGCACTCCTTGCCGACCTCTGCGCCGGCGACCATCGGAAAACGAGAAACGCGAACGCGTTCTTTTCCTTCTTCATGGCCGTCGGAAACGTCCTCGGATATGCAGCCGGTTCCTACGAAGGACTCCACCACGTGTTCCCGTTCACGCAAACAAAAGCGTGCGACGTTTACTGCGCGAACCTGAAGAGCTGCTTCTTCATCTCCATCGCTCTTCTTTTGATTCTGGCCACCGCGGCAGCAATCTACGTGAAGGAGATACCGTTCTCGCCGGAGAAAATCACCGGCGGGGACACCGACGAGGACGGTTCAGTTTCACGCGGTGGCATGCCTTGTTTCGGGGAATTATTCGGTGCTTTCCGGGAACTTCAGAGGCCTATGTGGATCCTTTTATTGGTGACGTGTCTTAATTGGATTGCGTGGTTCCCTTTCTTGTTGTTCGACACTGATTGGATGGGGAGAGAGGTGTATGGAGGAAAGGTTGGGGAAGGTAAGGCCTATGATATGGGCGTGCGCGCGGGTGCACTGGGTCTCATGTTAAACTCCGTTGTGCTTGGTATCACGTCGTTGGGTGTGGAAGTTTTGGCACGTGCCGTTGGGGGCGTTAAGAGGTTATGGGGAATCGTTAACTTCTTGCTTGCCATTTGTTTAGCCATGACCATTTTGGTTACTAAGTTGGCCGAAAATTCCCGCCACTATCCTCCCGGCGCTCACGGCGGCGACCCCCTCCCTCCTTCCACTGGCGTCAAGGCCGGCGCCTTGGCTCTCTTTTCCGTCCTCGGAATCCCTCTTGCGATTACTTACAGTATACCCTTTGCTATGGCATCTATATTCTCCAGCACCTCAGGTGCAGGCCAAGGGTTATCTCTGGGAGTTCTCAATCTTTCAATTGTTGTACCACAGATGTTGGTGTCAGTGGTTAGTGGACCATGGGATGGTCTGTTTGGAGGTGGTAACTTGCCAGCTTTCGTGGTGGGTGCTGTGGCGGCCGCAATCAGTGGCATACTATCCGTGGTTCTACTGCCGTCTCCACCGCCCGAGTTGGCCAAGGCTGTAACCACCGCCGGAGGCTTCCATTAA 1566 0.5517 MMDSLSTTKHNNHTKPSSLHVEAPPLEPSPLRKIIVVASVAAGVQFGWALQLSLLTPYVQLLGIPHELSSIIWLCGPISGLVVQPIVGYHSDRCTSRFGRRRPFIASGALAVAIAVFLIGYAADLGHMFGDSLAKKVRPRAITIFVIGFWILDVANNMLQGPCRALLADLCAGDHRKTRNANAFFSFFMAVGNVLGYAAGSYEGLHHVFPFTQTKACDVYCANLKSCFFISIALLLILATAAAIYVKEIPFSPEKITGGDTDEDGSVSRGGMPCFGELFGAFRELQRPMWILLLVTCLNWIAWFPFLLFDTDWMGREVYGGKVGEGKAYDMGVRAGALGLMLNSVVLGITSLGVEVLARAVGGVKRLWGIVNFLLAICLAMTILVTKLAENSRHYPPGAHGGDPLPPSTGVKAGALALFSVLGIPLAITYSIPFAMASIFSSTSGAGQGLSLGVLNLSIVVPQMLVSVVSGPWDGLFGGGNLPAFVVGAVAAAISGILSVVLLPSPPPELAKAVTTAGGFH* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02518 521 Pfam MFS/sugar transport protein 46 301 - -
Rops6g02518 521 Gene3D MFS general substrate transporter like domains 32 255 IPR036259 -
Rops6g02518 521 SUPERFAMILY MFS general substrate transporter 32 507 IPR036259 -
Rops6g02518 521 CDD MFS_SLC45_SUC 34 482 - -
Rops6g02518 521 MobiDBLite consensus disorder prediction 1 18 - -
Rops6g02518 521 PANTHER SUGAR TRANSPORTER 30 502 - -
Rops6g02518 521 NCBIfam sucrose/proton symporter 30 507 IPR005989 GO:0005886|GO:0008515|GO:0015770
Rops6g02518 521 FunFam Sucrose transport protein 28 503 - -
Rops6g02518 521 Coils Coil 521 521 - -
Rops6g02518 521 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02518 Rops-Chr6 45610477 45613485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02518 17 521 Sucrose Transporter Gene Family AT1G22710 67.969 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02518 K15378 - gmx:547679 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01198 5 25692954 25695890 Rops6g02518 6 45610477 45613485 PCT