Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02512 ATGTCGGCTGCAAAGGTGGTGCTGATAGGGAATAATGTCACTCTCTCCTTCGATGATATTGAAGCTAATTTCGCTCCCACAGTCAAAGGGTCTGGAGAATGTGGAGTCTTATATTTGGCAGAGCCACTTGATGCATGTACAGAACTGACAAATAAAGCTAAACAACTTCCAAATGCGAGTTCACCTTTTGTTTTGATGGTTAGAGGGGGATGTAGCTTTGAGGAAAAGGTCAGAAATGCACAAAATGCTGGCTACAAAGCTGCAATTGTCTATGATAATGAAGATGGTGGTGTCTTGGTTGCAATGGCAGGAAATTCTGCTGGTATAAGAATTCACGCGGTATTTGTATTGAAAGCTTCGGGTGAAATGCTAAAGAAATATGCTGGGTTGACTAATGTGGAAATATGGCTCATTCCAACTTTTGAAAACTCGGCATGGTCTATTATGGCTATTTCATTTATTTCCTTACTAGCTATGTCTGCAGTGCTCGCCACTTGTTTCTTCGTCCGCAGGCATCGCATTAGAAGAGAAAGGCCTCAAGCTTCTCGTGTTCGTGAGTTTCATGGTATGAGCAGTCGCCTTGTGAAAGCAATGCCAAGTTTGATATTTACTTCTGTTTTGGAAGATAACTGTACATCAAGAACATGTGCTATCTGCCTTGAAGATTATTGTGTTGGAGAGAAGCTCAGGATTCTGCCCTGCTGTCACAAGTTTCATGCTGCCTGTGTGGATTCTTGGCTTACATCATGGAGAACCTTTTGTCCAGTTTGCAAACGAGATGCGAGAACTGGCCTAACTGATCCACCACCTTCAGAATCCACACCTCTACTCTCATCAAGCCCAGCATCTGTGGCTTCCTCTGTCATATCTTCTGCGAGGTCATCATTAGCTTCATCTCCAGCAATACGAATTGCCCGGCCAACACAGTCTCCATCTGTTTCTCATAGCCACTCTTTAGCTAGTACCCCTTGTCTTCAGCCATCTTTTAGGTCCTACCGTCAATCCCCTTCCCTAAGCATCAGCAGAAGCTCTGTAGATCTTAGAAATGCATCCCAAAGATCTCTAGCTTCTCACTTGAATTCACCATATTCCATGGGATACCCTTCTTTGTCATCTCTTAACTCCAGGTACATGTCTCCGCACATCCCAAGTCCAAGCAATGCTTCAGCAAGTTTCCTTGGTTCATCCAGTCACCGCCAACATCCACTCCATTACAGTGAGTCAGCCACGAGCTTCTCGCCATTTGCATCTGCAAACTCCCTTCCAGACTGTTAA 1275 0.4447 MSAAKVVLIGNNVTLSFDDIEANFAPTVKGSGECGVLYLAEPLDACTELTNKAKQLPNASSPFVLMVRGGCSFEEKVRNAQNAGYKAAIVYDNEDGGVLVAMAGNSAGIRIHAVFVLKASGEMLKKYAGLTNVEIWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPQASRVREFHGMSSRLVKAMPSLIFTSVLEDNCTSRTCAICLEDYCVGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLTDPPPSESTPLLSSSPASVASSVISSARSSLASSPAIRIARPTQSPSVSHSHSLASTPCLQPSFRSYRQSPSLSISRSSVDLRNASQRSLASHLNSPYSMGYPSLSSLNSRYMSPHIPSPSNASASFLGSSSHRQHPLHYSESATSFSPFASANSLPDC* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02512 424 ProSiteProfiles Zinc finger RING-type profile. 216 258 IPR001841 -
Rops6g02512 424 SMART ring_2 216 257 IPR001841 -
Rops6g02512 424 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 176 263 - -
Rops6g02512 424 CDD PA_C_RZF_like 2 145 IPR044744 -
Rops6g02512 424 SUPERFAMILY RING/U-box 198 269 - -
Rops6g02512 424 SUPERFAMILY PA domain 63 127 IPR046450 -
Rops6g02512 424 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 140 273 - -
Rops6g02512 424 Pfam Ring finger domain 215 258 IPR001841 -
Rops6g02512 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 263 IPR013083 -
Rops6g02512 424 Pfam PA domain 60 124 IPR003137 -
Rops6g02512 424 Gene3D - 4 138 - -
Rops6g02512 424 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 4 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02512 Rops-Chr6 45552477 45563809 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02512 1 423 C3H Transcription Factor Family AT1G22670 49.423 9.76e-126 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02512 K15692 - gmx:100791248 654.055