Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02507 ATGGAGAAGCCAAATCTTGCATCAAAACCATCTTCAAAATGTGTGTTGCCACATCAAACCCCAAGGTTAAGGGATCACTACCTTCTTGGGAAGAAGCTTGGGCAAGGCCAATTTGGAACCACATATCTCTGCACTCACAAGGCCACAGGGAAGCTCTATGCCTGCAAATCAATCCCAAAGAGGAAGCTTTTGTGCCAAGAGGATTATGATGATGTGTGGAGAGAGATTCAGATCATGCACCATTTGTCTGAGCACCCAAATGTGGTTCAGATACAAGGGACCTATGAAGATTCTGTGTTTGTGCACCTTGTGATGGAGCTTTGTGCTGGGGGTGAGCTTTTTGATAGGATTATTCAGAAGGGGCATTACAGTGAGAGAGAGGCTGCAAAGTTGATAAAGACCATTGTTGGGGTGGTGGAGGCATGTCACTCTCTTGGTGTCATGCATAGGGATCTCAAGCCTGAAAATTTCTTGTTTGATACCCCTGGTGAAGATGCCCAGATGAAGGCTACGGATTTTGGCCTCTCTGTGTTCTACAAGCCAGGACAAGCCTTTCATGATGTAGTTGGAAGTCCCTACTATGTTGCCCCTGAGGTGTTGTGCAAGCAGTATGGACCAGAAGCGGATGTATGGAGTGCTGGTGTTATCCTTTACATCTTATTGAGTGGGGTCCCACCTTTCTGGGCTGAAACCGAATCAGGAATTTTCAGACAGATTTTACAAGGAGAGCTTGATTTTGTATCTGAACCATGGCCAAGTATCTCAGAAAGTGCTAAAGAATTGGTAAAACAGATGTTAGTTAGGCACCCGAAGACAAGAATTTCTGCTCATGAAGTCTTATGTCACCCTTGGATCGTTGATGATAAAGTTGCCCCTGACAAACCTCTGGATTCTGCTGTTTTGACACGCCTAAAGCATTTCTCTGCAATGAATAAACTTAAGAAGATGGCACTACGTGTCATAGCTGAAAGACTTTCAGAGGAAGAAATAGGCGGGTTAAAGGAGTTATTCAGGATGATTGACACAGACAACAGTGGGACAATAACTTTTGAGGAACTCAAGGATGGTTTGAAAAGTGTGGGCTCTAATCTAATGGAATCTGAAATTAAATCCCTTATGGATGCGGCTGATATAGACAACAGTGGAACAATAGACTATGGTGAATTTCTTGCTGCTACAATGCACTTGAATAAGATGGAAAGAGAGGAGAATTTGGTTGCAGCTTTTGCCTATTTTGATAAAGATAGTAGTGGTTACATCACCATCGATGAGCTTCAACAGGCTTGTAAAGACTTTGGCCTAGGTGACGTACATCTGGATGACATAATCAAAGAGATTGATGAAGACAATGATGGAAGAATTGATTATGGGGAGTTTGTAGCAATGATGAAAAAAGGTGATACAGATGCTGTTGGTAGGAGCAGAACCATGAAAGGCAATTTGAACTTCAACATTGCAGATGCATTTGGAGTGAAAGACTCTTCTTGA 1488 0.4281 MEKPNLASKPSSKCVLPHQTPRLRDHYLLGKKLGQGQFGTTYLCTHKATGKLYACKSIPKRKLLCQEDYDDVWREIQIMHHLSEHPNVVQIQGTYEDSVFVHLVMELCAGGELFDRIIQKGHYSEREAAKLIKTIVGVVEACHSLGVMHRDLKPENFLFDTPGEDAQMKATDFGLSVFYKPGQAFHDVVGSPYYVAPEVLCKQYGPEADVWSAGVILYILLSGVPPFWAETESGIFRQILQGELDFVSEPWPSISESAKELVKQMLVRHPKTRISAHEVLCHPWIVDDKVAPDKPLDSAVLTRLKHFSAMNKLKKMALRVIAERLSEEEIGGLKELFRMIDTDNSGTITFEELKDGLKSVGSNLMESEIKSLMDAADIDNSGTIDYGEFLAATMHLNKMEREENLVAAFAYFDKDSSGYITIDELQQACKDFGLGDVHLDDIIKEIDEDNDGRIDYGEFVAMMKKGDTDAVGRSRTMKGNLNFNIADAFGVKDSS* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02507 495 ProSitePatterns EF-hand calcium-binding domain. 341 353 IPR018247 -
Rops6g02507 495 Gene3D Phosphorylase Kinase; domain 1 28 112 - -
Rops6g02507 495 PANTHER SERINE/THREONINE-PROTEIN KINASE 20 459 - -
Rops6g02507 495 Pfam Protein kinase domain 29 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02507 495 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02507 495 FunFam Calcium-dependent protein kinase 1 29 112 - -
Rops6g02507 495 CDD STKc_CAMK 26 284 - -
Rops6g02507 495 ProSiteProfiles EF-hand calcium-binding domain profile. 400 435 IPR002048 GO:0005509
Rops6g02507 495 Pfam EF-hand domain pair 403 464 IPR002048 GO:0005509
Rops6g02507 495 Pfam EF-hand domain pair 333 393 IPR002048 GO:0005509
Rops6g02507 495 CDD EFh 333 392 IPR002048 GO:0005509
Rops6g02507 495 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02507 495 ProSiteProfiles EF-hand calcium-binding domain profile. 364 399 IPR002048 GO:0005509
Rops6g02507 495 SUPERFAMILY Protein kinase-like (PK-like) 23 295 IPR011009 -
Rops6g02507 495 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Rops6g02507 495 ProSitePatterns EF-hand calcium-binding domain. 413 425 IPR018247 -
Rops6g02507 495 SMART efh_1 368 396 IPR002048 GO:0005509
Rops6g02507 495 SMART efh_1 438 466 IPR002048 GO:0005509
Rops6g02507 495 SMART efh_1 332 360 IPR002048 GO:0005509
Rops6g02507 495 SMART efh_1 404 432 IPR002048 GO:0005509
Rops6g02507 495 ProSiteProfiles EF-hand calcium-binding domain profile. 438 469 IPR002048 GO:0005509
Rops6g02507 495 Gene3D Transferase(Phosphotransferase) domain 1 113 292 - -
Rops6g02507 495 ProSitePatterns EF-hand calcium-binding domain. 377 389 IPR018247 -
Rops6g02507 495 ProSiteProfiles EF-hand calcium-binding domain profile. 328 363 IPR002048 GO:0005509
Rops6g02507 495 SUPERFAMILY EF-hand 324 464 IPR011992 -
Rops6g02507 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Rops6g02507 495 Gene3D - 293 469 - -
Rops6g02507 495 ProSitePatterns Protein kinases ATP-binding region signature. 33 56 IPR017441 GO:0005524
Rops6g02507 495 FunFam Calcium-dependent protein kinase 1 293 467 - -
Rops6g02507 495 FunFam CDPK-related kinase 3 19 187 - -
Rops6g02507 495 FunFam Calcium-dependent protein kinase SK5 195 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02507 Rops-Chr6 45442867 45448589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02507 1 495 EF-hand Containing Proteins AT4G09570 82.020 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Rops6g02507 Pkinase 8.8e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02507 K13412 - gmx:547887 906.36