Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02503 ATGACATTAACCCAAATTTCTGAGAGATCATCAATGGATATGGAATCATGTGTACCTCCAGGATTTAGATTTCATCCAACAGAAGAGGAACTTGTGGGATATTACCTCAAGAGGAAGATAAACTCGCTTAAAATTGATCTAGATGTTATTGTTGAGATTGATCTCTACAAAATAGAACCATGGGACATACAAGATAGATGCAAGCTAGGATATGAACAACAGAATGAGTGGTACTTTTTCAGTCATAAGGATAAGAAGTATCCTACAGGGACAAGAACTAACAGGGCTACTGCTGCTGGATTCTGGAAAGCAACTGGAAGGGACAAGGCTGTGACATCCAAGAACAGAATAATAGGGATGAGGAAGACCCTTGTGTTCTACAAGGGACGTGCCCCAAATGGAAGGAAAACTGATTGGATTATGCATGAATATAGGCATCAAACCTCAGAACATGGCCCTCCACAGGCAAAAGGATGGGTTGTGTGCCGAGCATTTCGAAAGCCTACTCCAAGTCACAGGCAAGGTTTTGAACCATGGTGTAGTAGTCAACCACCCTATTTCAGAGATCAAAGCTATGCAAGACCCTTATCAATTACAGATATTTTAAATGAAACTCATGTGCTTCATCCTGCTGAAGGTACAAGTTTTAGTCACCCCTTTAGCTCGGAGCAGCAGTTTCTATCCAACCAAACTGTTATTGACAAACAACTCATTGAGCTTCCTCAGCTAGATAGTCCCACTGCAAGTTTGGCAATAAAAGAATGCAACCAACCACATCAAAATGGCCTAACAAATGAAGATTACGGTGATGAAAAGAGCAATAACATTGGACAAGGTATCGATTGGAAAAGCTTGGACAACTTGTTCACTTCACAGTTTTCAGATTCAGCTTACTTTTCACATCCAAACTTGCCCATGATGATACCTCATAGCCATGAGTTACAACCTCAAAATCAACCTAATAACATCCTAGGATGCTTCCCTGATTCATCATAA 996 0.4056 MTLTQISERSSMDMESCVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIVEIDLYKIEPWDIQDRCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVTSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQAKGWVVCRAFRKPTPSHRQGFEPWCSSQPPYFRDQSYARPLSITDILNETHVLHPAEGTSFSHPFSSEQQFLSNQTVIDKQLIELPQLDSPTASLAIKECNQPHQNGLTNEDYGDEKSNNIGQGIDWKSLDNLFTSQFSDSAYFSHPNLPMMIPHSHELQPQNQPNNILGCFPDSS* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02503 331 MobiDBLite consensus disorder prediction 311 331 - -
Rops6g02503 331 MobiDBLite consensus disorder prediction 312 331 - -
Rops6g02503 331 ProSiteProfiles NAC domain profile. 18 167 IPR003441 GO:0003677|GO:0006355
Rops6g02503 331 FunFam Nac domain-containing protein 86 27 170 - -
Rops6g02503 331 SUPERFAMILY NAC domain 12 167 IPR036093 GO:0003677|GO:0006355
Rops6g02503 331 Gene3D NAC domain 27 170 IPR036093 GO:0003677|GO:0006355
Rops6g02503 331 Pfam No apical meristem (NAM) protein 19 145 IPR003441 GO:0003677|GO:0006355
Rops6g02503 331 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02503 Rops-Chr6 45422267 45426427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02503 14 330 NAC Transcription Factor Family AT1G71930 53.614 6.32e-114 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops6g02503 NAM 6.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02503 - - var:108325420 556.214