Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02495 ATGGGTGATTCCAATTCCACCAAGAATGACATGCATGCAACTTCCGCTGAACAATCAGAGGACCGTGCTTGCCTGTCAGCAATGGTGCTCGTTACCAATCTTGTATATCCTGCAGTTTTGAATGCTGCAATTGAGCTAAACTTGTTTGAGATCATTGCTAATAAGGCAACCCCACCTGGTGCATTCATGTCTTCCTCTGACATTGCTTCTCACATCTCAACAACCCAACACTCTGACTTCCCTAATAGGCTTGACCGCATGCTTCGTTTGCTTGCCAGTTACTCCCTTCTCACTTCTTCCACTCGCACCACTGTCAATGGTACCACTGACATAGTCTATGGTCTCTCCCAAGTTGGAAAATACTTGGTCCCTGATCAAACTAGGGGCTACTTGGCTTCATTCACCCAATTCCTTTGTTATCCAGCATTGTTAAAGGTTTGGCTGAACTTCAAGGAAGCGGTGGTGGATCCAGACATTGATCTGTTCAAGAAACTTCACGGACTCAACTCGTACCAGTACATGGAAAAGGATAAAAAAATGAACCATATTTTTAACAAGTCAATGGCTGACGTGTGTGCAACAGAGATGAAAAGAATGCTTGAAATATATAATGGATTTGAGGGAATATCAACTTTGGTTGACGTGGGAGGTGGAACTGGACAAAATCTCAAGATGATAATCTCCAAGTACCCTTCAATAAAGGGAATTAATTTTGATCTGCCCCAAGTTATTGAAAATGCACCACCGATCCCAGGGATTGAGCATGCTGGGGGAGATATGTTTGCAAGTGTTCCACAAGGTGACGCCATAATACTAAAGGCTGTATGCCACAATTGGTCAGATGAAAAATGCTTAGAATTTTTAAGCAAATGTCACAAAGCATTGTCACCGAATGGGAAGGTTATTGTTGTGGAGTTCATACTGCCAGAAGAACCACAACCAACAGAAGAATCTCAACTCGATTCCACTCTCGACAATCTCATGTTTATCACTGTTGGTGGAAGGGAAAGAACTCAGAAACAATATGAGAATTTGGGCAAGCTTTCTGGATTCTCAAAATTTCATGACTTTGTTAAAATGGTTAATTTTCACATCTGTCTCGTCGGATTATGGCCTGTTGAAGCTGGTGGGTTGCCAAGTCTTCGTCTTCGCCAGGGTTCACCATTTTCTACTTTGATTCCACCACCATGGATGATGGCCTCTGTTGCAGATGGTGTGGAAGCAGTTGAAGTTGCTGCAGTTACCGCCTCCAAAGAAACAATTCTTGGCTAG 1272 0.43 MGDSNSTKNDMHATSAEQSEDRACLSAMVLVTNLVYPAVLNAAIELNLFEIIANKATPPGAFMSSSDIASHISTTQHSDFPNRLDRMLRLLASYSLLTSSTRTTVNGTTDIVYGLSQVGKYLVPDQTRGYLASFTQFLCYPALLKVWLNFKEAVVDPDIDLFKKLHGLNSYQYMEKDKKMNHIFNKSMADVCATEMKRMLEIYNGFEGISTLVDVGGGTGQNLKMIISKYPSIKGINFDLPQVIENAPPIPGIEHAGGDMFASVPQGDAIILKAVCHNWSDEKCLEFLSKCHKALSPNGKVIVVEFILPEEPQPTEESQLDSTLDNLMFITVGGRERTQKQYENLGKLSGFSKFHDFVKMVNFHICLVGLWPVEAGGLPSLRLRQGSPFSTLIPPPWMMASVADGVEAVEVAAVTASKETILG* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02495 423 SUPERFAMILY "Winged helix" DNA-binding domain 19 126 IPR036390 -
Rops6g02495 423 CDD AdoMet_MTases 211 308 - -
Rops6g02495 423 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 130 355 IPR029063 -
Rops6g02495 423 Gene3D - 4 122 IPR036388 -
Rops6g02495 423 Pfam Dimerisation domain 39 92 IPR012967 GO:0046983
Rops6g02495 423 FunFam Caffeic acid O-methyltransferase 125 367 - -
Rops6g02495 423 Pfam O-methyltransferase domain 147 352 IPR001077 GO:0008171
Rops6g02495 423 PANTHER O-METHYLTRANSFERASE 27 354 IPR016461 GO:0008168
Rops6g02495 423 FunFam Caffeic acid 3-O-methyltransferase 4 122 - -
Rops6g02495 423 Gene3D Vaccinia Virus protein VP39 124 363 IPR029063 -
Rops6g02495 423 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 28 372 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02495 Rops-Chr6 45329623 45336024 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02495 14 351 Monolignol Biosynthesis Gene Families AT5G54160 45.133 1.07e-99 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02495 - - gmx:100787536 553.518