Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02494 ATGGGCGATTCCAATTCCACCAAGAATGACATGCATACAACTTCCTCTGAACTATCAGAGGACCGTGCTTGCCTGTCAGCAATGGTGCTCACTACCAATCTTGTATATCCTGCAGTTCTGAATGCTGCAATTGAGCTAAACTTGTTTGAGATCATTTCTAATAAGGCAACCCCACCTGGTGCGTTCATGTCTTCCTCTGACATTGCTTCTCACATCTCAACAAACCAACACTCTGACTTCCCTAATAGGCTTGACCGCATGCTTCGTTTGCTTGCCAGTTACTCCCTTCTCACTTCTTCCACTCGCACCACTGTCAATGGTACCACTGAGATAATCTATGGTCTCTCCCAAGTTGGAAAATACTTGGTCCCTGATCAAACTAGGGGCTACTTGGCTTCATTCACCCAATTCCTTTGTTATCCAGCATTGTTAAAGGTTTGGCTGAACTTCAAGGAAGCGGTGGTGGATCCAGACATTGACCTGTTCAAGAAACTTCACGGACTCAACTCGTACCAGTACATGGAAAAGGATCAAAAAATGAACCATATTTTTAACAAGTCAATGGCAGACGTGTGTGCTACAGAGATGAAAAGAATGCTTGAAATATATAATGGATTTGAGGGAATATCAACTTTGGTTGACGTGGGAGGTGGAACTGGACAAAATCTCAAGATGATAATGTCCAAGTACCCTTCTATAAAGGGTATCAATTTTGATCTGCCCCAGGTTATTGAAAATGCACCACCAATCCCAGGGATTGAGCATGTTGGAGGAGATATGTTTGCAAGTGTTCCACAAGGTGACGCCATAATACTGAAGGCTGTGTGCCACAATTGGTCAGATGAAAAATGCTTAGAATTTTTAAGCAAATGTCAGAAAGCATTGTCACCAAATGGGAAGGTGATTGTTGTGGAGTTCATTTTGCCAGAAGAACCAGAAGCAACGGAAGAATCCAAACTTGTTTCTACTCTCGACAATCTCATGTTTATCACAGTTGGCGGAAGGGAAAGAACTGCGAAACAGTATGAGAATTTGAGCAAGCTCTCAGGATTTTCTAAATTTCAAGTTGCTTGTCGCGCTTTCAATAGTCTAGGAGTTATGGAATTTTATAAGTAA 1116 0.4211 MGDSNSTKNDMHTTSSELSEDRACLSAMVLTTNLVYPAVLNAAIELNLFEIISNKATPPGAFMSSSDIASHISTNQHSDFPNRLDRMLRLLASYSLLTSSTRTTVNGTTEIIYGLSQVGKYLVPDQTRGYLASFTQFLCYPALLKVWLNFKEAVVDPDIDLFKKLHGLNSYQYMEKDQKMNHIFNKSMADVCATEMKRMLEIYNGFEGISTLVDVGGGTGQNLKMIMSKYPSIKGINFDLPQVIENAPPIPGIEHVGGDMFASVPQGDAIILKAVCHNWSDEKCLEFLSKCQKALSPNGKVIVVEFILPEEPEATEESKLVSTLDNLMFITVGGRERTAKQYENLSKLSGFSKFQVACRAFNSLGVMEFYK* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02494 371 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 28 371 IPR016461 GO:0008168
Rops6g02494 371 SUPERFAMILY "Winged helix" DNA-binding domain 20 126 IPR036390 -
Rops6g02494 371 PIRSF O-mtase 4 371 IPR016461 GO:0008168
Rops6g02494 371 CDD AdoMet_MTases 211 308 - -
Rops6g02494 371 Gene3D - 4 122 IPR036388 -
Rops6g02494 371 Gene3D Vaccinia Virus protein VP39 124 371 IPR029063 -
Rops6g02494 371 FunFam Caffeic acid O-methyltransferase 125 371 - -
Rops6g02494 371 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 130 368 IPR029063 -
Rops6g02494 371 PANTHER O-METHYLTRANSFERASE 27 361 IPR016461 GO:0008168
Rops6g02494 371 Pfam Dimerisation domain 39 92 IPR012967 GO:0046983
Rops6g02494 371 FunFam Caffeic acid 3-O-methyltransferase 5 122 - -
Rops6g02494 371 Pfam O-methyltransferase domain 147 352 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02494 Rops-Chr6 45323220 45324690 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02494 14 361 Monolignol Biosynthesis Gene Families AT5G54160 46.132 4.23e-107 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02494 - - gmx:100787536 579.326