Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02488 ATGGATCCAAAAGTAAGTGTATGTGCTAACAACTGGGCAAGGTCCTCTTCCTTAACCACTCCTGGGAATGGATTACAGACAAATTTGTCCTCAGATCCTCCCCCTTTCTATGGGATCAGGATTGAATCCCCTTTCAAAGAATTCAACCAATCTACTCCAACTCAATCTGTGCTTCCAGGTGAATCTAACAAAGATATTAAGATCCCTGATCAAGAAAATTGTACACTGGGTGACTCATCACAAAACAGTAAACTCCAAGATTGGGATCCCAGTGTGATGTTGACTAACCTTTCCTTCCTGGAAGAAAAGATTCATCAGCTCCAGGATCTAGTGCATTTGATAGTAAATAAAAAGTGCCAACCTTTTGAACAACCTCATGAACTTGTGACTCAGGAACAGCAGCTCATAACAGCTGATCTTACATCAATTATTGTTCAACTAATCTCTACCGCAGGTAGTCTTCTCCCTTCTGTTAGGCACACCCTGACAAACACGAGTCCATTGTTTGGACAACTTGGCCAGCTTCGTGGGATTAACCTTCCCATTGGATCCCCAGGTTGTGGTGTTCAGCCACAAAATAATAGTGGAAATCAATTGTTTGATCAGTCCATTCAAAATAATCTACCTAGTAATTGTGAAATGGAGAAAAACTACAATAAGGAAGAACATGAACATAAAGATGAAGAAGAAGTGGATGAGGGAGAGAACCTTCCACCCGGTTCCTATGAGATTTTACAATTAGAAAAGGAAGAAATCCTTGCCCCTCATACACATTTCTGTACAATATGTGGGAAAGGGTTCAAGCGGGATGCAAATCTCCGAATGCACATGCGAGGCCATGGTGATGAGTACAAAACACCAGCAGCTCTTGCAAAACCACATAAGGAAACTGGGTCTGAACCTAGGCTTATCAAGAGGTATTCCTGCCCCTATGCTGGCTGCAAGCGTAACAAGGATCACAAGAAATTTCAGCCTCTAAAGACTATTTTATGTGTCAAAAACCACTACAAAAGAACACACTGTGACAAGAGTTACATTTGCAGCAGATGCCACACCAAGAAGTTTTCAGTCATTGCAGATCTTAAAACTCATGAAAAACACTGTGGCAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTTTTTCAAGGCCATACACCAGCTATTCCTTTGGATGACAACACCAAAGGACAGGCTGAGCCACTTGATCACTGTAACACCAAAGAAAACAGCAATAAAATAGGAAGTATGAACTTCAGTTTTGGATCAAATCCTTCAAGTGAAAATGGAGTTCAAAACATCATGGATGTCAAGGGTAATCTTGATGATCCTATCAATTATTTCTCATCGTTTAACTTTGAAGGCTTTAGTGGATTTAACGAATTCTCCCAACCTCCATTTGAAGATTCAGAAGGTTCTTTCTCTTTTCTGATGTCTGGATCGTTTAATTATGCTCCAAAATCTGGTGGTGAATCAAGTTCTGACAATCTGTAG 1530 0.4046 MDPKVSVCANNWARSSSLTTPGNGLQTNLSSDPPPFYGIRIESPFKEFNQSTPTQSVLPGESNKDIKIPDQENCTLGDSSQNSKLQDWDPSVMLTNLSFLEEKIHQLQDLVHLIVNKKCQPFEQPHELVTQEQQLITADLTSIIVQLISTAGSLLPSVRHTLTNTSPLFGQLGQLRGINLPIGSPGCGVQPQNNSGNQLFDQSIQNNLPSNCEMEKNYNKEEHEHKDEEEVDEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPRLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYICSRCHTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDNTKGQAEPLDHCNTKENSNKIGSMNFSFGSNPSSENGVQNIMDVKGNLDDPINYFSSFNFEGFSGFNEFSQPPFEDSEGSFSFLMSGSFNYAPKSGGESSSDNL* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02488 509 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 285 IPR013087 -
Rops6g02488 509 SUPERFAMILY beta-beta-alpha zinc fingers 256 283 IPR036236 -
Rops6g02488 509 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 72 481 IPR044300 GO:0010044|GO:0010447
Rops6g02488 509 SMART c2h2final6 258 280 IPR013087 -
Rops6g02488 509 SMART c2h2final6 345 367 IPR013087 -
Rops6g02488 509 SMART c2h2final6 307 340 IPR013087 -
Rops6g02488 509 Gene3D Classic Zinc Finger 242 311 - -
Rops6g02488 509 ProSitePatterns Zinc finger C2H2 type domain signature. 260 280 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02488 Rops-Chr6 45265649 45268410 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02488 226 507 C2H2 Transcription Factor Family AT1G34370 67.708 1.23e-135 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops6g02488 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02488 - - gmx:100170687 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02488 6 45265649 45268410 Rops6g02488 6 45265649 45268410 ECH