Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02486 ATGGAAGATTCAGAGGAAGATGAGCTTCTGAATCTTAGCCTTTCAGTTGCTGCTGATAGAGAAAGGAAAAAGAAGGGAAAGACAAGGGAAAATGTTTCCATGAGTACTACTAGGAACTCCTATGAAGGCTATGAAGGGAAAATCTTTAGGCTTCTCCAAATGAGGGAGAAGATGCTAAGACAAGACCAAAGGAGGAAAGGAGTTGTAGAAGATGGGAATGGCCTCCCTCTGATCCATTTGCTTCTCACAACTGCCACTGCAGTTGATGAGAACAACTTGGATTCAGCTTTAGAGAATCTAACTGATTTATATCAAACTGTTTCCCTGACAGGTGACTCAGTTCAACGTGTGGTGGCCTATTTTGCAGATGGTTTGGCTGCAAGGCTTCTCACTAGGAAATCTCCATTCTTTGACATGATCATGGAAGAACCAACAAATGAAGAAGAGTTTCTTGCATTCACAGATCTTTACAGAGTCTCACCTTACTTCCAATTTGCTCATTTCACAGCAAACCAAGCTATCTTGGAGGCCTTTGAGAAGGAGGAAGAGAGGAACAACCGTGCTCTACATGTCATTGACTTTGATGTCTCCTACGGCTTCCAATGGCCTTCTCTTATTCAGTCTCTTTCTGAGAAGGCAACCAGTGGCAACAGAATATCCCTCAGGATAACTGGATTCGGGAAGAACCTAAAAGAACTACAAGAAACTGAGTCTAGATTGGTTAGCTTCTCAAAGGGTTTTGGTAATCTTGTGTTTGAATTCCAAGGGCTGCTAAGAGGCTCAAGGGTCATCAACCTAAGGAAGAAAAAGAATGAAACTGTGGCAGTGAACTTGGTTTCTTATTTGAACACTTTGAGTTGTTTCATGAAGATCTCTGACACATTGGGATTTGTTCATTCTCTTAACCCCTCCATTGTTGTGTTGGTGGAGCAAGAAGGTAGCAGGAGTCCTAGGACCTTCTTGTCGAGATTCACAGACTCTTTGCATTATTTTGCTGCCATGTTTGATTCACTGGATGATTGTCTCCCACTTGAGAGCACTGAGAGGTTGAGAATTGAGAAGAAACTTCTTGGTAAAGAGATAAAAAACATGCTCAACTATGACATGGATGGTGTGGATTGCCCAAAATATGAAAGGATGGAAACATGGAAAGCAAGAATGGAGAATCATGGTTTTGCTGCCACCAAAATAAGCTCAAAGTCTATAATCCAAGCAAAACTGCTCCTGAAGATGAGGACCCATTATTGTCCACTCCAATTTGAGGAAGAGGGAGGTGGGGGTTTCAGGGTTTCTGAAAGAGATGATGGAAGGGCTATCTCTTTAGGGTGGCAAAATAGGTTTCTGCTTACAGTCTCAGCATGGCAACCAGTCTCATAG 1377 0.4241 MEDSEEDELLNLSLSVAADRERKKKGKTRENVSMSTTRNSYEGYEGKIFRLLQMREKMLRQDQRRKGVVEDGNGLPLIHLLLTTATAVDENNLDSALENLTDLYQTVSLTGDSVQRVVAYFADGLAARLLTRKSPFFDMIMEEPTNEEEFLAFTDLYRVSPYFQFAHFTANQAILEAFEKEEERNNRALHVIDFDVSYGFQWPSLIQSLSEKATSGNRISLRITGFGKNLKELQETESRLVSFSKGFGNLVFEFQGLLRGSRVINLRKKKNETVAVNLVSYLNTLSCFMKISDTLGFVHSLNPSIVVLVEQEGSRSPRTFLSRFTDSLHYFAAMFDSLDDCLPLESTERLRIEKKLLGKEIKNMLNYDMDGVDCPKYERMETWKARMENHGFAATKISSKSIIQAKLLLKMRTHYCPLQFEEEGGGGFRVSERDDGRAISLGWQNRFLLTVSAWQPVS* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02486 458 ProSiteProfiles GRAS family profile. 68 455 IPR005202 -
Rops6g02486 458 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 65 450 IPR005202 -
Rops6g02486 458 Pfam GRAS domain family 77 455 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02486 Rops-Chr6 45247811 45249187 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02486 73 455 GRAS Transcription Factor Family AT1G14920 34.848 3.58e-57 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops6g02486 GRAS 1.8e-92 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02486 - - gmx:100809458 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01212 5 25943870 25945243 Rops6g02486 6 45247811 45249187 PCT