Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02483 ATGGTTCTGGCACTTCTTTGCTGTGGATTGTCATCCTCTGTTGAAGTTAAAGGCTCATCAGGAGTACAATATCCTACCGTGGTAGGCTTTACATCAGATCTAGATATAGCTATGTCAGGCAACTCAAATTGCATTATATACATAGGCAATCTAGATGAGAGGGTGACAGAGAGGGTGTTGTATGATATATTAATTCAAGCAGGAAGAGTAGTGGACTTGCACATTCCTAAAGATAATAAGGAATCCAATAAACCAAAAGGTTTTGCTTTTGCAGAATATGAAACTGAGGAGATTGCAGACTATGCTGTCAGGCTTTTCTCAGGCCTGGTAACACTGTACAACAGAACACTGAAGTTTGCAGTGCGTTCTTGA 372 0.4032 MVLALLCCGLSSSVEVKGSSGVQYPTVVGFTSDLDIAMSGNSNCIIYIGNLDERVTERVLYDILIQAGRVVDLHIPKDNKESNKPKGFAFAEYETEEIADYAVRLFSGLVTLYNRTLKFAVRS* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02483 123 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 38 122 - -
Rops6g02483 123 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 123 IPR000504 GO:0003723
Rops6g02483 123 Gene3D - 37 123 IPR012677 -
Rops6g02483 123 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 118 IPR000504 GO:0003723
Rops6g02483 123 SMART rrm1_1 45 120 IPR000504 GO:0003723
Rops6g02483 123 SUPERFAMILY RNA-binding domain, RBD 30 117 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02483 Rops-Chr6 45195337 45198121 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02483 33 110 Eukaryotic Initiation Factors Gene Family AT4G34110 32.051 3.34e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02483 K12831 - gmx:100784532 155.992