Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02474 ATGGAACACAAAGTGAAAACCACAACAACACCTCTTCCTCCTCCTTCACCAATTCCAATCCATGTTCCCACCATGCTCTCAAACTCCCCTCCTCCTTCTTCATCTTCTTCACCTCCTTCACAATCTCCCACTCCTTTCCCTTCACCCTCTCAGTGTTCTCCACCACCACCACCTGTGGTGGTTAGTCCTTGTGCTGCCTGCAAGATCCTCCGCCGCAGGTGTGTGGAGAAGTGTGTCTTGGCTCCCTATTTCCCTCCCACTGATCCACTCAAGTTCACCATTGCCCATAGAGTCTTTGGAGCTAGCAACATCATCAAGTTCTTGCAGGAACTGCCAGAATCTCAGAGAGCAGATGCTGTGAGCAGTATGGTTTATGAGGCAAATGCTAGGATCAGAGACCCAGTTTATGGTTGTGCAGGAGCAATATGCCAACTCCAAAAGCAAGTTAGTGAGCTACAAGCACAATTGGCCAAAGCACAAGCTGAGCTAGTCAACATGCAGTGCCAACAAACTAATTTAGTGGCACTAATTTGCATGGAAATGAGTCAATCACAAGACCAGCACATGCTTCAGCCTCAACCTCACATTGATATGAGCTGCTTCTTAGAGGACAACAGTTTTGGCTCTGCTTGGGATCCTCTTTGGACATGA 651 0.4793 MEHKVKTTTTPLPPPSPIPIHVPTMLSNSPPPSSSSSPPSQSPTPFPSPSQCSPPPPPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAELVNMQCQQTNLVALICMEMSQSQDQHMLQPQPHIDMSCFLEDNSFGSAWDPLWT* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02474 216 Pfam Lateral organ boundaries (LOB) domain 63 160 IPR004883 -
Rops6g02474 216 ProSiteProfiles LOB domain profile. 62 163 IPR004883 -
Rops6g02474 216 MobiDBLite consensus disorder prediction 1 52 - -
Rops6g02474 216 Coils Coil 142 169 - -
Rops6g02474 216 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 62 186 - -
Rops6g02474 216 MobiDBLite consensus disorder prediction 10 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02474 Rops-Chr6 45055320 45056727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02474 59 216 AS2 family AT1G07900 72.393 1.49e-79 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops6g02474 LOB 2.6e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02474 - - gmx:100806667 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02474 6 45055320 45056727 Rops6g02474 6 45055320 45056727 ECH