Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02470 ATGAACAAGAGGTCTTTCAAGTACGCTTGGGTGCTTGACAAGCTGAAGGCTGAGCGTGAAAGAGGGATCACAATTGATATTGCTCTGTGGAAGTTTGAGACCACCAAGTACTACTGCACAGTCATTGATGCCCCTGGACACAGGGATTTCATTAAGAATATGATTACTGGTACATCCCAAGCTGACTGCGCTGTTCTTATCATTGATTCCACTACTGGTGGTTTTGAAGCTGGTATTTCCAAGGATGGACAGACTCGTGAGCATGCTCTCCTTGCTTTCACTCTTGGTGTGAAGCAAATGATTTGCTGCTGTAACAAGATGGATGCCACTACACCTAAGTACTCCAAGGCTAGGTATGATGAAATCGTGAAGGAAGTTTCTTCCTATTTGAAGAAGGTTGGATATAACCCTGACAAGATTCCTTTTGTTCCCATCTCTGGTTTTGAGGGAGACAACATGATTGAGAGGTCTACAAACCTTGACTGGTACAAGGGTCCAACCCTTCTTGAGGCCCTTGACCAGATCAATGAGCCCAAGAGGCCATCAGACAAGCCCCTCCGATTGCCACTTCAGGATGTCTACAAGATTGGAGGAATTGGAACTGTGCCAGTGGGACGTGTTGAAACTGGTGTCTTGAAACCTGGAATGGTGGTGACTTTTGGACCAACTGGACTGACAACTGAAGTTAAGTCTGTGGAGATGCACCATGAAGCTCTCCAAGAGGCCCTTCCTGGTGACAATGTGGGATTCAATGTTAAGAATGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCCTCAAACTCTAAGGATGACCCTGCCAAGGAGGCTGCTAACTTCACCTCCCAGGTTATCATCATGAACCACCCTGGCCAGATTGGAAATGGCTATGCTCCTGTCCTTGATTGCCACACCTCTCACATTGCTGTCAAGTTTGCTGAACTCGTGACCAAGATTGACAGGCGATCTGGTAAAGAGCTTGAGAAGGAGCCCAAATTCTTGAAGAATGGTGATGCTGGTTTAGTCAAGATGATTCCCACCAAGCCCATGGTGGTTGAAACTTTCGCTGCGTATCCTCCACTGGGTCGTTTTGCCGTGAGAGACATGCGTCAAACTGTGGCTGTGGGAGTCATCAAGAACGTGGAGAAGAAGGATCCTACTGGAGCTAAGGTCACCAAGGCTGCACAGAAGAAGGTGCTTTTATTTCAAGTCTTGGTAACTTCTGTCTTGGACTTAGTGTCAAGTCTACACCATCATCTCCCAACTTTTGTTCCCAGAACTGGGTTCTTGATCGACGGTGGCAAGGCTATTTCTCTTGTCGTTTTTATGCTTTATTTTTGTTTTGTGTCCAAGGCAGTCATACATTATGATTTAATCAACAATGGTGATGGTTTTGATGATGATGATTCATGGGAATTTAAGGATGCCATATCTGGAACAAGAAATCAAGATCAAGCATCTACTATAGATCACAGAGATCTACTGACGCATTTATCAACAAAATTAGAGCCAACTAATTATGTAGCATTTTATAAGAAATTGAAGGGTGAATTGTGCAATGATGTCTTGTTCCATCTTCAGAATCTAAAGGCTGATGAAGTTGAAGTTGTTATAACCAATACAAAAGAAATTTTGAACCAGTTTCTTTGCAAATCGCGAATCATTTGCCTACACAGACTTATTATCTATCATATGTACTAA 1701 0.4368 MNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGLVKMIPTKPMVVETFAAYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVTKAAQKKVLLFQVLVTSVLDLVSSLHHHLPTFVPRTGFLIDGGKAISLVVFMLYFCFVSKAVIHYDLINNGDGFDDDDSWEFKDAISGTRNQDQASTIDHRDLLTHLSTKLEPTNYVAFYKKLKGELCNDVLFHLQNLKADEVEVVITNTKEILNQFLCKSRIICLHRLIIYHMY* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02470 566 PRINTS GTP-binding elongation factor signature 20 28 IPR000795 GO:0003924|GO:0005525
Rops6g02470 566 PRINTS GTP-binding elongation factor signature 40 50 IPR000795 GO:0003924|GO:0005525
Rops6g02470 566 PRINTS GTP-binding elongation factor signature 56 67 IPR000795 GO:0003924|GO:0005525
Rops6g02470 566 PRINTS GTP-binding elongation factor signature 100 109 IPR000795 GO:0003924|GO:0005525
Rops6g02470 566 NCBIfam translation elongation factor EF-1 subunit alpha 3 385 IPR004539 GO:0003746|GO:0005525|GO:0006414
Rops6g02470 566 Gene3D - 1 178 IPR027417 -
Rops6g02470 566 PANTHER TRANSLATION FACTOR 1 385 - -
Rops6g02470 566 FunFam Elongation factor 1-alpha 181 268 - -
Rops6g02470 566 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 278 381 IPR009001 -
Rops6g02470 566 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 13 28 IPR031157 -
Rops6g02470 566 CDD EF1_alpha 1 179 - -
Rops6g02470 566 Gene3D Translation factors 275 382 - -
Rops6g02470 566 CDD EF1_alpha_II 182 272 - -
Rops6g02470 566 FunFam Elongation factor 1-alpha 275 382 - -
Rops6g02470 566 Pfam Elongation factor Tu C-terminal domain 274 381 IPR004160 -
Rops6g02470 566 Pfam Elongation factor Tu GTP binding domain 9 174 IPR000795 GO:0003924|GO:0005525
Rops6g02470 566 CDD EF1_alpha_III 275 378 - -
Rops6g02470 566 Gene3D Translation factors 181 268 - -
Rops6g02470 566 FunFam Elongation factor 1-alpha 1 178 - -
Rops6g02470 566 Pfam Elongation factor Tu domain 2 200 265 IPR004161 GO:0005525
Rops6g02470 566 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 201 IPR027417 -
Rops6g02470 566 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 182 IPR000795 GO:0003924|GO:0005525
Rops6g02470 566 SUPERFAMILY Translation proteins 183 273 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02470 Rops-Chr6 44996133 45001752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02470 1 392 Eukaryotic Initiation Factors Gene Family AT5G60390 95.408 0.0 787
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02470 K03231 - osa:4331813 793.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02470 6 44996133 45001752 Rops6g02470 6 44996133 45001752 ECH