Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02460 ATGCCGCCTGAACCATCGTCTTTGGAACGAAAGGACTTCTTCAAGGAGAGGAAGCACGAGAGGTCTGAACCGCTCGTGGCGAGATGGAGAGATTCCTCTCATCATCGAGACTTCAATCGCTGGGGATCTGCCGAGTTTCGCAGACCGCCAGGTCATGGTAAGCAGGGTGGTTGGCACCTGTTTTCCGAAGAATCTGGTCATGGGTATGCGATTTCTCGGTCTGGCGACAAGATGCTGGAGGAAGATACTCGGCCATCGATTTCAAGGGGGGATGGAAAATATGGCAGGAGCAATAGGGAAAATAGAGGTCCCTTTGGCCAGAGGGATTGGAGAGGAGGGCATTCATGGGAAGCCACTAATGGGCCTCTAAATTTGTCCAGGAGGCCACCTGAAGTGAATAATGACCAGAGGTCAGTTGATGATGCCCTAACATACTCCTCTCATCCACATTCTGATTTTGTAAACACCTGGGATCAGCACCACTTGAAAGACCAGCATGATAAGATGGGTGGTGTCAATGGGTTGGGAGCAGGCCCAAGATGTGATAATTCTCTGGGTTCAATTGAATGGAAGCCACTTAAATGGACCCGTTCTGGAAGCTTGTCCTCTCGAGGCTCGGGTTTTAGCCACTCAAGTAGCTCAAGGAGCATGGGAGGGGCAGATTCCTATGAAGCAAAGGCTGAGTTACAACCCAAAAATGCAACTGCTAATGAGTCGCATTCAGGGGAAGCTGCTGCATGTGTGACATCTTCTGTGCCATCTGAAGATACAGCTTCTAGAAAGAAGCCTAGGCTAAATTGGGGTGAGGGACTTGCGAAGTATGAGAAGAAAAAAGTTGAGGGACCTGAGGTAAGTGCAAACAAAGATGGCCCTGTCTTGTCTACTAGTAATACGGAACCTTGTAACTTCTTCAGTCCAAACTTAGCAGATAAAAGCCCAAAAGTCACAGGATTCTCAGACTGTGCATCTCCTGCAACTCCATCTTCTGTTGCCTGCAGTTCCTCACCAGGTGTGGATGATAAATTATTTGGAAAGGCTGCAAATGTGGACAATGATGTTAGTAATTTGGCCGGTTCACCTGCTTCTGGGTCCCGGAATAATCTGCTTAGGTTTTCTTTTAACTTAGATAAATTGGATATTGACTCCTTGAATAATTTGGACGCATCAATTATTGAGTTAGTGCAATCTGATGATCCAAGTATTGTGGATTCTGGTCTAATGAGGTCCAATGCAATTAATAAGTTGCTGATATGGAAGGCTGACATTTCCAAGGTATTGGAGGTGACTGAATCTGAAATTGATTTGCTTGAAAATGAACTGAAGTCACTAAAATCTGAATCTGGGGACAGATGTTCGTGTCCAGCAGCATTTGGCTCCCAGATGGTAGATAATAATGAGAAATCCTGTGAAGAACATGTTGGAGTCTCTCATAAGGTCACTCGGCCAGTACCCTTGAAAATTGTTTCATCCGATGAACCCAAGACAGAGAAGATGCCTCAGTCAACTAATTTACATAGTATTCATGAGAATGGCAAGGAGGAGGATATTGATAGTCCTGGAACAGCAACTTCTAAATTTGTTGAGCCTCTGCCTTTGATTAAAGCAGTTTCTTCATCTGATACTGGGGGATATGATAACTTCTCTAGGGACTTGGACGCTGTTCAGTCTACAGCTCTAAATTGCTTAGTCCCCTGTAGTACCAGGAAGGATGCTAGCGAATCTGCTTGTGGTGATGGCAATACATCTATGGAGGTAAAGGATAGCCTGGATACTACCACTGGAGCTAGCTTATGTTCTAGCTATGAGGATACTTATAGTACGATTATTTCTTCCAATAAAGAATCTGCTGACAGAGCGCATGGACTATTTGCTAAGTTATTACCCGAAGAATGTTGTAGGATTGGTAATATGGGAGCTAGCAGTGACTCATGCTCTGATACATTAATTATGGAAAAATTTGCAGAGAAAAAGCGGTTTGCAAGATTTAAGGAGAGAGTTATCACACTTAAGTTCAAAGCCTTGCATCACCTGTGGAAAGAAGATTTGCGCTTACTGTCTATTAGGAAATGCCGCCCAAAATCTCACAAGAAAAATGAACCAAGTGTGCGAACTACCTGTAATGGTAATCAGAGGAATCGATTCTCCATTCGTTCACGTTTTTCTTTCCCTGCAGGAAATCATCTTAGCTTGGTCCCAACATCAGAGGTAATTAATTTTACAAGCAAGCTGCTTTCAGACCCCCAAGTTAAAGTTCAGAGAAACACCCTGAAGATGCCTGCATTAATTTTGGATGAAAAGGAGAGAATGATTTCAAAATTCATATCTAGTAATGGGCTGGTTGAAGATCCATTGGCTATTGAGAAAGAAAGGGCTGTGATCAATCCTTGGACCTCTGAAGAGAGAGAAATTTTCTTGGAGAAATTTGCTGCCTTTGGAAAAGATTTTCGGAAAATTGCCTCTTTCCTTGACCACAAGACAACTGCTGACTGTGTTGAATTCTACTACAAGAATCATAAATCTGATTGTTTTGAGAAACTTAAGAAGCAAGGTGTTGGTATGCTAGGAAAGTCATTTTCTAAAACTGACTTGGTGGTGTCAGGTAAAAAATGGAATCGTGAAATGAATGCTGCTTCGCTCGAGATTTTGAGTGCAGCTTCAGTGATGGCAGATGGCATTGCAGGTAATAAAAAAATGCGTGCAGGAAGTTTCCTTTTGGGGGGATATGGTAATGTAAAAATATCAAGGGGTGAGGACAGCATCACAGAGAGATCAAGCAGTTTTGACATTCTTGGGGATGAAAGAGAGACTGCCGCTGCAGCTGATGTATTGGCTGGTATTTGTGGTTCTCTTTCATCTGAGGCTATGAGTTCCTGCATAACAAGTTCAGTTGATCCTGTAGAAGGTAACAAGAATAGAAAGTTCCTGAAAGTGAACCCTTCATGCAAACAACCCTTGACGCCTGATGTTACTCAGAATGTTGATGATGAAACTTGTTCAGATGAGAGCTGTGGTGAAATGGATCCTGCTGATTGGACAGATGACGAAAAGGCAGCTTTTCTCCAGGCTGTATCATCTTTTGGTAAGGATTTTGCAAAGATAGCACGGCGTGTAGGAACAAGGTCCCAAGAACAGTGCAAACTTTTCTTTAGCAAGGCTCGAAAATGTCTTGGATTGGATCTAATGCACCCTGTTCCAGGAAATGTAGGGTGTCCGGCGAACGATGATGCAAATGGTGGTGGGAGTGACACTGATGATGCATGTGTTGTTGAGACAGGCTCAGTGGTTGGCACTGATAAGTCTGGCACTAAAACAGATGAGGACCTGCCTTCATATGTTATGAACACATACCATGATGAATCCAATCCCCTGGAAGCTAGGAACCTTTCAGCTGAATTAAATGAATCAAAGGAAATTAATGGGACCGAAGTAGATCTTGAAGATGTAAATGTGGTTTCCGATGCTCGTGCAATTAAGGTTGAATCTAAACTGGGTTCTGATGGTGGTGAAGTTGTCTTGTGCAGTCCTGGTGTGTCTGGTTCAGTCAGTGGACAAGCAGCAATAATTATGTCAGATAGCATGGAAGTTGGAAAAGATAAAACAAATAAATTGGGAGGTGCAGTTACTGAATTGATTTCTCCTTCGGGGATAATTGAACCTTGCGAGCATAATTCAAATGCTGTGGATAGACTGGTGTCTGAGGTTTCTTCTGGGGGTCTTGGAAATGAATTGGAGAGGCAAAGGGTTTCATCATCACGATGTCTTGACGTCAAACATGAAGCTGGTACAGGTGTTGTGCAAGATTCAAGCACTACAGTAAATGCTTCACTTTCATCTGTGGGCAATTCTTGTTCAGGATTGAGTTTTGATACGGAAAATAAGCATGTGTCCCTTGGAAAGCCTCATATATCAGCATTGTCTATGAAGGAACTTCATGCAACTGCAAATTCATTGGTGCAAAATACTGCTGTTGCTGATGTTCAGTGTGAGAAAACGGCTAGCCAAGATCGACTCTCCTCTAGTTGTGATGTTCAGGGAAGTAGAGATATGCGTTGTCATAACTCCATTAGCAACGGTGACCATCAGCTTCCTATTCCTGGGAACCTTGCTGAGGCTGTTAGCATCCTCCAGGGCTATCCCTTGCCAGTGCCCATTAAGAAAGAAGTGAATGGGGATATGAATTGCAGTTCAGCAACTGAGTTGCCTCTTCTGTCCCAAAAGATTGAACAGGCTGATGATCATTTCAAAACGATGTCACGGCATTCTTCAGATTCAGAAAAAATATCAAGAAATGGTGATGTTAAACTGTTTGGGAAGATACTAACCAATCCTTCATCCTCTCAGAAACCTAATTTGACTACCAAGGGAAGTGAAGAAAATGGTACCCATCATCCCAAGATAAGCAACAAGTCTTCTAGTCTTAAATTTACTGGCCATCATAACACTGATGGAAATTTGAAAATTTTGAAGTTTGACCGTAATGACTCTAATGATTATCTTGGCCTTGAAAATGTTCCCATGAGGAGTTATGGTTATTGGGATGGGAACAGAATACAGACCGGTCTCCCATCATTGCCTGATTCTGCCATCTTGCTAGCAAAATATCCTGCTGCCTTTTGCAATTATCCTACATCTTCTGCCAAATTGGAGCAACAGTCATTGCAGGCATTTGCCAAGAATAATGAACGGCACTTGAATGGTGCTTCTGCTTTTACAACTAGAGACATCAATGGCAGCACTGCAGTGATTGATTATCAGATGTTTAGAAGTAGGGATGGTACAAAAATGCAGCCATTTATGGTAGATGTCAAGCACTGCCAAGACGTATTCTCGGAGATGCATAGAAGAAATGGTTTTGAAGCAATCTCTAGTTTGCAGCAACAGGGGAGGGGAATGTTGGGAATGAATGGCGTTGGAAGACCGGGGATTATTGTGGGAGGATCATGCAGTGGTGTCTCAGATCCTGTGGCAGCAATCAAAATGCATTATTCCAATTCTGACAAGTGTGGTGGTCAGAGCGGGGGCATCACAAGAGAGGATGAATCATGGGGAGGGAAAGGGGACTTAGGAAGGTAG 5073 0.4319 MPPEPSSLERKDFFKERKHERSEPLVARWRDSSHHRDFNRWGSAEFRRPPGHGKQGGWHLFSEESGHGYAISRSGDKMLEEDTRPSISRGDGKYGRSNRENRGPFGQRDWRGGHSWEATNGPLNLSRRPPEVNNDQRSVDDALTYSSHPHSDFVNTWDQHHLKDQHDKMGGVNGLGAGPRCDNSLGSIEWKPLKWTRSGSLSSRGSGFSHSSSSRSMGGADSYEAKAELQPKNATANESHSGEAAACVTSSVPSEDTASRKKPRLNWGEGLAKYEKKKVEGPEVSANKDGPVLSTSNTEPCNFFSPNLADKSPKVTGFSDCASPATPSSVACSSSPGVDDKLFGKAANVDNDVSNLAGSPASGSRNNLLRFSFNLDKLDIDSLNNLDASIIELVQSDDPSIVDSGLMRSNAINKLLIWKADISKVLEVTESEIDLLENELKSLKSESGDRCSCPAAFGSQMVDNNEKSCEEHVGVSHKVTRPVPLKIVSSDEPKTEKMPQSTNLHSIHENGKEEDIDSPGTATSKFVEPLPLIKAVSSSDTGGYDNFSRDLDAVQSTALNCLVPCSTRKDASESACGDGNTSMEVKDSLDTTTGASLCSSYEDTYSTIISSNKESADRAHGLFAKLLPEECCRIGNMGASSDSCSDTLIMEKFAEKKRFARFKERVITLKFKALHHLWKEDLRLLSIRKCRPKSHKKNEPSVRTTCNGNQRNRFSIRSRFSFPAGNHLSLVPTSEVINFTSKLLSDPQVKVQRNTLKMPALILDEKERMISKFISSNGLVEDPLAIEKERAVINPWTSEEREIFLEKFAAFGKDFRKIASFLDHKTTADCVEFYYKNHKSDCFEKLKKQGVGMLGKSFSKTDLVVSGKKWNREMNAASLEILSAASVMADGIAGNKKMRAGSFLLGGYGNVKISRGEDSITERSSSFDILGDERETAAAADVLAGICGSLSSEAMSSCITSSVDPVEGNKNRKFLKVNPSCKQPLTPDVTQNVDDETCSDESCGEMDPADWTDDEKAAFLQAVSSFGKDFAKIARRVGTRSQEQCKLFFSKARKCLGLDLMHPVPGNVGCPANDDANGGGSDTDDACVVETGSVVGTDKSGTKTDEDLPSYVMNTYHDESNPLEARNLSAELNESKEINGTEVDLEDVNVVSDARAIKVESKLGSDGGEVVLCSPGVSGSVSGQAAIIMSDSMEVGKDKTNKLGGAVTELISPSGIIEPCEHNSNAVDRLVSEVSSGGLGNELERQRVSSSRCLDVKHEAGTGVVQDSSTTVNASLSSVGNSCSGLSFDTENKHVSLGKPHISALSMKELHATANSLVQNTAVADVQCEKTASQDRLSSSCDVQGSRDMRCHNSISNGDHQLPIPGNLAEAVSILQGYPLPVPIKKEVNGDMNCSSATELPLLSQKIEQADDHFKTMSRHSSDSEKISRNGDVKLFGKILTNPSSSQKPNLTTKGSEENGTHHPKISNKSSSLKFTGHHNTDGNLKILKFDRNDSNDYLGLENVPMRSYGYWDGNRIQTGLPSLPDSAILLAKYPAAFCNYPTSSAKLEQQSLQAFAKNNERHLNGASAFTTRDINGSTAVIDYQMFRSRDGTKMQPFMVDVKHCQDVFSEMHRRNGFEAISSLQQQGRGMLGMNGVGRPGIIVGGSCSGVSDPVAAIKMHYSNSDKCGGQSGGITREDESWGGKGDLGR* 1691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02460 1690 MobiDBLite consensus disorder prediction 1 148 - -
Rops6g02460 1690 SUPERFAMILY Homeodomain-like 779 839 IPR009057 -
Rops6g02460 1690 CDD SANT 1011 1049 IPR001005 -
Rops6g02460 1690 MobiDBLite consensus disorder prediction 119 148 - -
Rops6g02460 1690 Gene3D - 954 1062 - -
Rops6g02460 1690 MobiDBLite consensus disorder prediction 8 43 - -
Rops6g02460 1690 MobiDBLite consensus disorder prediction 1439 1478 - -
Rops6g02460 1690 SMART sant 792 840 IPR001005 -
Rops6g02460 1690 SMART sant 1007 1055 IPR001005 -
Rops6g02460 1690 MobiDBLite consensus disorder prediction 196 219 - -
Rops6g02460 1690 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1011 1060 IPR017930 -
Rops6g02460 1690 ProSiteProfiles SANT domain profile. 791 842 IPR017884 -
Rops6g02460 1690 MobiDBLite consensus disorder prediction 196 264 - -
Rops6g02460 1690 Gene3D - 772 844 - -
Rops6g02460 1690 ProSiteProfiles SANT domain profile. 1010 1057 IPR017884 -
Rops6g02460 1690 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 1687 - -
Rops6g02460 1690 ProSiteProfiles Myb-like domain profile. 1011 1053 IPR001005 -
Rops6g02460 1690 MobiDBLite consensus disorder prediction 74 107 - -
Rops6g02460 1690 Pfam Myb-like DNA-binding domain 795 836 IPR001005 -
Rops6g02460 1690 Pfam Myb-like DNA-binding domain 1010 1051 IPR001005 -
Rops6g02460 1690 MobiDBLite consensus disorder prediction 1667 1690 - -
Rops6g02460 1690 Coils Coil 419 446 - -
Rops6g02460 1690 MobiDBLite consensus disorder prediction 232 256 - -
Rops6g02460 1690 MobiDBLite consensus disorder prediction 1439 1457 - -
Rops6g02460 1690 SUPERFAMILY Homeodomain-like 1009 1057 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02460 Rops-Chr6 44938887 44949058 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops6g02460 Myb_DNA-binding 8.5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02460 - - gmx:100810588 2603.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02460 6 44938887 44949058 Rops6g02460 6 44938887 44949058 ECH