Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02458 ATGGGTTACTCCATATTCTGTCATGTTTTGCTTTTGTCCATTTGTGTGAGAATTTCTTCAACTTCCCCCATTGAAGATCAAAAGAGAGATAGGATTACTCAGCTGCCAGGGCAGCCAAAGAATGTTGGATTTGCTCAGTACTCAGGGTATGTGAATGTGAATGAGGAGAGGGCATTGTTTTATTGGTTGATTGAGGCACCAGTGAGTCGTGGACCTAAGTCAAGGCCACTAGTGTTATGGCTTAATGGTGGACCTGGATGCTCCTCTATTGCTTATGGTGCATCCGAAGAAGTTGGCCCTTTTCACATTAGGCCTGATGGGAAGTCACTATACTTGAATCCTTATGCTTGGAATAATTTGGCAAATATACTATTCCTTGATTCTCCTGCCGGTGTTGGATTTTCATATACCAATAAAACTACGGATCTGTATACATTTGGTGACCAGAAAACAGCTGAAGATGCTTATACTTTTCTTGTTAATTGGTTTGAAAGATTTCCTCAGTACAAGCATAGAGAATTCTACATTGCTGGAGAAAGTTATGCAGGTCATTATGTTCCTCAGTTGGCTCAAATTGTTTACCAAAGAAATAAGGGAATCAATAATCCAGTTATAAATTTGAAGGGATTTATGGTTGGAAATGCTGTTACTGATGATTATCATGATTATGTTGGCACATTTGAGTACTGGTGGACCCATGGTTTGGTTTCAGATTCCACATACAGGATGCTAAGAATTGCATGTGAGTTTGGGTCCTCACAGCATCCATCATTGCAATGCATGCAGGCTCTCAGAGTTGCAGTTGTGGAGCAGGGAAACATTGATCCTTATAGCATTTATACACGGCCTTGTAACAATACAGCATCACTCAGACGTGGCTTGAAGGGTCGCTATCCATGGATGTCTAGGGCATATGATCCTTGTACTGAAAGGTATTCTGCTTTGTATTTCAATCGTCCAGAAGTTCAGAAGGCACTTCATGCCAACGTAACTGGGATTCCTTATACATGGAAAACATGCAGTGATATTGTTGGGAACTATTGGACTGATTCTCCACTATCTATGCTTCCTATATATCAAGAACTTATTAATGCTGGCCTCCGGATATGGGTATTCAGTGGAGACACTGATGCTGTGGTTCCAATCACTGCCACTAGATATTCTATTGATGCCTTGAAGCTACCTACCCTCATCAACTGGTACCCTTGGTATGATAATGGCAAGGTTGGTGGCTGGAGTCAAGTTTATAAAGGGCTCACATTGGTCACAGTAAGAGGAGCTGGACATGAGGTTCCACTTCATAGGCCTCGCCAAGCATTTATTCTTTTTAGGTCATTCTTGGAGAACAAGTCCATGCCATCTTCAAGTTAG 1371 0.4158 MGYSIFCHVLLLSICVRISSTSPIEDQKRDRITQLPGQPKNVGFAQYSGYVNVNEERALFYWLIEAPVSRGPKSRPLVLWLNGGPGCSSIAYGASEEVGPFHIRPDGKSLYLNPYAWNNLANILFLDSPAGVGFSYTNKTTDLYTFGDQKTAEDAYTFLVNWFERFPQYKHREFYIAGESYAGHYVPQLAQIVYQRNKGINNPVINLKGFMVGNAVTDDYHDYVGTFEYWWTHGLVSDSTYRMLRIACEFGSSQHPSLQCMQALRVAVVEQGNIDPYSIYTRPCNNTASLRRGLKGRYPWMSRAYDPCTERYSALYFNRPEVQKALHANVTGIPYTWKTCSDIVGNYWTDSPLSMLPIYQELINAGLRIWVFSGDTDAVVPITATRYSIDALKLPTLINWYPWYDNGKVGGWSQVYKGLTLVTVRGAGHEVPLHRPRQAFILFRSFLENKSMPSSS* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02458 456 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 436 IPR001563 GO:0004185|GO:0006508
Rops6g02458 456 Gene3D - 308 344 - -
Rops6g02458 456 FunFam Carboxypeptidase 355 449 - -
Rops6g02458 456 Gene3D - 355 448 - -
Rops6g02458 456 Gene3D alpha/beta hydrolase 26 286 IPR029058 -
Rops6g02458 456 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Rops6g02458 456 FunFam Carboxypeptidase 305 452 - -
Rops6g02458 456 SUPERFAMILY alpha/beta-Hydrolases 27 452 IPR029058 -
Rops6g02458 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Rops6g02458 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 419 432 IPR001563 GO:0004185|GO:0006508
Rops6g02458 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Rops6g02458 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Rops6g02458 456 Pfam Serine carboxypeptidase 36 449 IPR001563 GO:0004185|GO:0006508
Rops6g02458 456 FunFam Carboxypeptidase 26 286 - -
Rops6g02458 456 ProSitePatterns Serine carboxypeptidases, histidine active site. 419 436 IPR033124 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02458 Rops-Chr6 44913739 44918298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02458 318 452 Calmodulin-binding Proteins AT2G22960 27.941 5.08e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02458 K16297 - gmx:100805722 888.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02458 6 44913739 44918298 Rops6g02458 6 44913739 44918298 ECH