Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02444 ATGGCTAAGGATGTTGAGGTTGCTGAGCGTGGCTCCTTCTCTGGAAAGGACTACCATGACCCTCCTCCTGCACCTCTCATTGATGCTGAGGAGTTAACGAAGTGGTCCTTTTACAGGGCACTCATTGCTGAGTTCATTGCCACTTTGCTTTTCCTTTACGTGACTGTGTTGACTGTGATTGGGTACAATAGACAGAATGATGTAAAAGCTGGTGGTGATGCTTGTGGAGGAGTTGGTATTCTTGGGATTGCATGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCTGGGATTTCAGGTGGTCACATCAATCCAGCAGTGACATTTGGGCTGTTCTTGGCTCGCAAGGTGTCTTTGATCCGAGCTATCATGTACATGGTGGCTCAGTGCTTGGGAGCTATCTGTGGAGTTGGGTTGGTCAAGGCCTTCCAAAAGTCTTACTACAACAGGTATGGTGGTGGGGCTAATTCTCTCAATGATGGATACAGCACTGGTGTTGGTTTGGGTGCTGAGATCATTGGTACCTTTGTTTTGGTATACACTGTGTTCTCTGCTACTGATCCTAAGAGGAGTGCTAGAGATTCCCATGTGCCGGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCATTTGGCCACCATCCCAGTCACTGGTACCGGTATTAACCCAGCTAGGAGTCTTGGAGCTGCTGTTATCTACAACCAAGACAAGCCTTGGGATGACCATTGGATCTTTTGGGTTGGACCATTCGCTGGAGCAGCCATTGCAGCCTTCTACCACCAATTCATCTTAAGAGCTGGAGCAGTCAAGGCTCTTGGATCATTCAGGAGCAACCCTACTGTTTGA 864 0.4826 MAKDVEVAERGSFSGKDYHDPPPAPLIDAEELTKWSFYRALIAEFIATLLFLYVTVLTVIGYNRQNDVKAGGDACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAICGVGLVKAFQKSYYNRYGGGANSLNDGYSTGVGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNQDKPWDDHWIFWVGPFAGAAIAAFYHQFILRAGAVKALGSFRSNPTV* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02444 287 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g02444 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Rops6g02444 287 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g02444 287 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Rops6g02444 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
Rops6g02444 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 276 IPR034294 -
Rops6g02444 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g02444 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g02444 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g02444 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g02444 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g02444 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g02444 287 FunFam Probable aquaporin PIP1-2 24 285 - -
Rops6g02444 287 NCBIfam MIP family channel protein 43 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02444 Rops-Chr6 44651960 44654963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02444 1 287 Major Intrinsic Protein MIP AT2G37170 83.972 1.15e-179 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02444 K09872 - gmx:100817292 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03305 8 71657242 71658760 Rops6g02444 6 44651960 44654963 ECH
Rops6g00979 6 23658424 23659313 Rops6g02444 6 44651960 44654963 ECH
Rops6g02444 6 44651960 44654963 Rops6g02444 6 44651960 44654963 ECH