Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02438 ATGTTTGTGGTTATGGATTCCATGGAGAGGAGCTCAGAAAGGTGCTTAGATTCTCAACTGTGGCATGCTTGTGCTGGTGCCATGGTTCAAATGCCACCTCTCAACACAAAAGTTTTCTACTTTCCTCAGGGCCACGCAGAACACGCTCATGAGAAAGTGGATTTTGGGCAAACCCGTGTTCCACCACTCATCCCTTGCAGGGTGTCTGGTATAAAATACATGGCAGACCCTGACACTGATGAAGTCTATGTGAAAATGAGGTTGATCCCTTTGAGAGAAAATGAATTGGATTTGGAAGATGATTGTTTCTTGGGGAACAGTGGAATGGAGGGTCAAGAAAAACCCACCTCTTTTGCCAAGACGTTGACACAATCTGATGCCAACAATGGTGGAGGGTTTTCTGTGCCTCGTTACTGTGCTGAAACTATCTTCCCAAGGTTGGATTATTCAGCAGAACCACCAGTTCAGACCATAATTGCCAAGGATATGCATGGACAGTGTTGGAAGTTTAGGCATATCTATAGAGGGACACCTCGGAGGCATCTTTTGACCACTGGATGGAGCAATTTTGTGAACCAAAAGAAGCTTGTTGCTGGTGATTCTATTGTGTTTCTGAGGGCAGAAAATGGAGATCTTTGTGTTGGGATAAGGAGGGCTAAGAAGGGGATTGGTGGTGGAACTGAGTTTTCTTCTGGTTGGAACCAGGTACCCCCTATGTTTGGTGGGGGTTCTGGTTTCTTGTGTGGGAGTGAGACCAACTTGGTGAGTAGAAAAGGTGGTGGTGGTGGTGATTTGATGGGAAGAGTGACAGCTGAATCTGTTGTTGAGGCTGTAACTTGTGCTGTTAATGGCAGACCCTTTGAGGTTGTGTACTACCCAAGGGCTAGTACCCCAGAGTTTTGTGTTAAGGCTTCTGCTGTGAAGGCTTCAATGCAAATACAGTGGTGTTCAGGGATGAGATTCAAAATGCCCTTTGAAACTGAGGATTCTTCTAGGATCAGTTGGTTCATGGGAACCATATCTTGTGCTCAAGTTGCAGATCCAATTCGTTGGCCTGATTCTCCTTGGCGTCTTCTGCAGGTGGTGTGGGATGAACCGGATCTACTTCAAAATGTGAAGTGTGTAAACCCTTGGTTGGTTGAACTAGTCTCAAACATGCCCACCTTCAATATCTCTCCATTCTCACCTCCAAGAAAGAAACAACGGTTTATACAGGACCCATATTTTCACCTTTTCAACCAACTTCCAATGCCATCACTCTCCAACAATCTTCTTAGTTATAGTAACTCTCTGTGTAACATTAAAGATAATAGTTCTGCAGTCATACAGGGAGCCAGGCATGCTCAATTTGGACTAACTCCATCTGATTTTCCCTTCAACAAGCTTCAATCAGACATGCTTCTAGGTGGGTTCTCAAGACTTGACCAAGCAGCTCAACCTGTTAGGCCTCCTTGTGAAACCTCCTATAAGAGCAGCACTAAGACCAATGTTGATATATCTTGCTTGTTGACTATGGGAAATCCTGGCCAGAATTTTAAGGAATCCAATGAAGCAAAAGCACCCCACATCTTGTTATTTGGAAAACTCATTCATACTGAACAGAAGAGTTCTAACAGTAGCTCTGCTAGTACTACTGGGAATAGTGTATCTGAAGGGAATTCCCTCAAGACATCAAACGCTTCTGATGGCCTTGGTTCTGCTTTGCATCAAAATAGTCCAATTGAGAACTCTTCTGATGGAGGGTCTCCCTGGTACAACGATCAACACAAGTCTGATCTTGGAAATGTTAACACATTATGCATCGCTTTGTAA 1812 0.4421 MFVVMDSMERSSERCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHEKVDFGQTRVPPLIPCRVSGIKYMADPDTDEVYVKMRLIPLRENELDLEDDCFLGNSGMEGQEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGTEFSSGWNQVPPMFGGGSGFLCGSETNLVSRKGGGGGDLMGRVTAESVVEAVTCAVNGRPFEVVYYPRASTPEFCVKASAVKASMQIQWCSGMRFKMPFETEDSSRISWFMGTISCAQVADPIRWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPTFNISPFSPPRKKQRFIQDPYFHLFNQLPMPSLSNNLLSYSNSLCNIKDNSSAVIQGARHAQFGLTPSDFPFNKLQSDMLLGGFSRLDQAAQPVRPPCETSYKSSTKTNVDISCLLTMGNPGQNFKESNEAKAPHILLFGKLIHTEQKSSNSSSASTTGNSVSEGNSLKTSNASDGLGSALHQNSPIENSSDGGSPWYNDQHKSDLGNVNTLCIAL* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02438 603 Gene3D - 314 388 - -
Rops6g02438 603 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Rops6g02438 603 FunFam Auxin response factor 315 388 - -
Rops6g02438 603 SMART B3_2 118 220 IPR003340 GO:0003677
Rops6g02438 603 CDD B3_DNA 117 218 IPR003340 GO:0003677
Rops6g02438 603 MobiDBLite consensus disorder prediction 536 589 - -
Rops6g02438 603 FunFam Auxin response factor 116 220 - -
Rops6g02438 603 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 560 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops6g02438 603 Gene3D - 116 220 IPR015300 -
Rops6g02438 603 SUPERFAMILY DNA-binding pseudobarrel domain 112 219 IPR015300 -
Rops6g02438 603 Pfam Auxin response factor 277 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops6g02438 603 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02438 Rops-Chr6 44526515 44529823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02438 1 591 B3 DNA Binding Superfamily AT4G30080 56.601 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops6g02438 B3 2.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02438 - - ccaj:109810654 1038.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02438 6 44526515 44529823 Rops6g02438 6 44526515 44529823 ECH