Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02436 ATGGTTGGACCAAACTTTATGGACGAGATAGACTGCGGCAGCTTCTTTGACCACATCGACGACCTCCTTGATTTCCCCGTCGAGGATGTCGACGGCGCCGCCGCTACCTTGCCTTCCGTCTCCGCCGGCGCCGGGAACTGCAACTCGCTGGCGAGCATATGGCCAGAGTCCGAGTCATTTCCGGGCTCTGACTCGGTGTTTTCTGGCAACAGTGCTTCGGACCTCTCGGCGGAGCTCTCCGTTCCGTATGAAGACATTGTGCAATTGGAATGGCTGTCCAACTTTGTGGAGGACTCCTTTTGTGGGGGGAGCCTGACCATGAAGAAAGTGGAGAAGGAGCAGCCATCATCATGTGACACCAAGGAGGACTCAGTGCATAACCAGTTCCAGACATCAAGCCCAGTTTCAGTTCTTGAAAGCAGCAGTTCCTGCTCTGGTGGGAAGCCTGCAGAGATTTACATCCCAGTGCCATGTGGACGTGCACGCAGCAAGCGTCCACGCCCTGCAACCTTCAACCCTCGTCCTGCCATGCAGCTCATTTCCCCTGCTTCCTCTTTTGTTGGGGAGAACATGCAGCCTAATGTCAGGGCCTCTTCAGATTCTGACAATTTTGCTGAGTCTCAACCTTTGACCAAGAAGCAAGCTTCTGGAGAGCCCAAGAAGAAAAAGAAAATCAAAATTCCACTTCCAGTAGCTCCAGCTGATAGCAATGTGATGAATGCTTCACAACCTGTTAGGAAATGCATGCATTGTGAGATAACCAAGACTCCACAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTCTGCAATGCTTGTGGTGTTCGCTTTAAGTCTGGCAGGCTCTTCCCCGAATACCGGCCTGCTGCCAGTCCAACTTTTTGTCCATCCTTGCACTCCAATTCCCATAAGAAGGTCCTGGAAATGAGATGCAAGGATATTGAGAAATCTGGTCTTCCACCACATTCAGCTGCCTCACCTGAACTCATTCCCAACACTAACAGCAGCCTTACCCTGGAGTACATGTGA 1029 0.5199 MVGPNFMDEIDCGSFFDHIDDLLDFPVEDVDGAAATLPSVSAGAGNCNSLASIWPESESFPGSDSVFSGNSASDLSAELSVPYEDIVQLEWLSNFVEDSFCGGSLTMKKVEKEQPSSCDTKEDSVHNQFQTSSPVSVLESSSSCSGGKPAEIYIPVPCGRARSKRPRPATFNPRPAMQLISPASSFVGENMQPNVRASSDSDNFAESQPLTKKQASGEPKKKKKIKIPLPVAPADSNVMNASQPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRFKSGRLFPEYRPAASPTFCPSLHSNSHKKVLEMRCKDIEKSGLPPHSAASPELIPNTNSSLTLEYM* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02436 342 MobiDBLite consensus disorder prediction 116 146 - -
Rops6g02436 342 CDD ZnF_GATA 247 294 IPR000679 GO:0006355|GO:0043565
Rops6g02436 342 PANTHER GATA TRANSCRIPTION FACTOR 16 316 - -
Rops6g02436 342 ProSiteProfiles GATA-type zinc finger domain profile. 242 278 IPR000679 GO:0006355|GO:0043565
Rops6g02436 342 FunFam GATA transcription factor 238 320 - -
Rops6g02436 342 SMART GATA_3 242 292 IPR000679 GO:0006355|GO:0043565
Rops6g02436 342 ProSitePatterns GATA-type zinc finger domain. 248 273 IPR000679 GO:0006355|GO:0043565
Rops6g02436 342 Pfam GATA zinc finger 248 281 IPR000679 GO:0006355|GO:0043565
Rops6g02436 342 Gene3D - 243 292 IPR013088 GO:0006355|GO:0008270
Rops6g02436 342 MobiDBLite consensus disorder prediction 189 214 - -
Rops6g02436 342 MobiDBLite consensus disorder prediction 121 146 - -
Rops6g02436 342 MobiDBLite consensus disorder prediction 189 224 - -
Rops6g02436 342 PIRSF Txn_fac_GATA_plant 3 334 IPR016679 GO:0003677|GO:0005634|GO:0045893
Rops6g02436 342 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 246 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02436 Rops-Chr6 44489316 44492673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02436 54 316 C2C2-Gata Transcription Factor Family AT1G08010 36.721 9.06e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops6g02436 GATA 5.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02436 - - gmx:100815693 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02436 6 44489316 44492673 Rops6g02436 6 44489316 44492673 ECH