Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02427 ATGGAGTTTTCCAATGTAAATTGCAATGGTTCATTGAACCACCTTTGCAATGGTACTACTAGTAGTGACCCTCTTAACTGGGGCATGGCTGCTGAGGCTTTGAAAGGTAGCCACCTTGATGAGGTGAAACACATGGTGGAGGAGTTTAGGAAACCGGTGGTTTTGTTAGGTGGGAAAACCCTCACCATTTCTCAGGTGGCGGCGATTGCCACCCACAACACCGGCGTGGCGGTGGAGCTGGCGGAGGAGGCACGTTCCGCCGTTAAGGCTAGCAGTGATTGGGTCATGGATAGCATGAACAAAGGCACCGATAGTTATGGGGTCACCACAGGATTTGGTGCAACCTCACATAGGAGAACCAAGCAAGGTGGTGCTCTCCAAAACGAGCTCATAAGATTTTTGAATGCTGGCATTTTTGGCAATGGCACTGAAAATAGTCAGACATTGCCTCACTCAGCCACAAGGGCAGCCATGTTGGTTAGGATCAACACCTTGCTTCAAGGATATTCAGGCATCAGATTTGAAATCATGGAGGCCATAGCCAAGTTTCTGAACCATAACATAACTCCATGTCTCCCTCTAAGGGGGACAATCACAGCATCAGGTGACTTGGTCCCTTTATCTTATGTTGCTGGCCTTTTGATTGGTAGGCCAAACTCCAAATCTATTGGACCTAATGGACAAGTTCTCAATGCTAAAGAGGCTTTTCAACTAGCTGGAATTGAAGCTGGTTTCTTTGAGTTGCAACCTAAAGAGGGTTTGGCACTAGTGAATGGTACTGCAGTGGGATCTGGCTTGGCATCAATGGTTCTTTTTGAGGCAAACATACTTGCTGTCCTCTCAGAAGTCTTGTCAGCAGTTTTTGCTGAAGTCATGCAAGGAAAACCAGAATTCACTGACCACTTGACTCATAAATTAAAGCACCACCCTGGTCAAATTGAGGCTGCAGCTATAATGGAACATATTTTAGATGGAAGCTCATATGTTAAGGCTGCACAGAAGTTACATGAGATTGATCCACTTCAGAAGCCTAAACAAGATAGGTATGCTCTTAGAACATCACCTCAATGGCTTGGACCACATATTGAAGTGATCAGACATGCAACTAAGATGATTGAGAGGGAGATAAACTCTGTGAATGACAACCCTCTAATTGATGTTTCAAGGAATAAGGCACTTCATGGAGGAAATTTCCAGGGTACCCCCATTGGTGTTTCAATGGATAACACCCGTTTAGCCATTGCTTCAATTGGGAAACTTATGTTTGCACAATTCTCTGAGCTTGTCAATGACTTCTATAACAATGGATTACCTTCAAATCTAACAGCTAGCCGCAACCCAAGCTTGGATTATGGCTTCAAAGGTGCTGAAATTGCAATGGCATCTTATTGCTCAGAACTTCAATACCTTGCCAATCCTGTCACCAACCATGTCCAAAGTGCTGAGCAACATAACCAAGATGTGAACTCTTTAGGCCTAATTTCCTCAAGAAAGACTGCTGAAGCAATAGAGATATTGAAGCTCATGTCTTCCACTTTCTTAGTTGCATTGTGCCAAGCAATTGATCTGAGGTATTTGGAGGAAAACTTGAAGAGCACTGTAAAGAACACTGTAAGTCAAGTGGCTAAGAGAGTTCTAACAGTTGGTGTCAATGGTGAGTTGCATCCATCAAGGTTCTGTGAGAAGGACTTGCTCAAAATTGTTGACCGTGAGTATGTCTTTGCTTACATTGATGACCCCTGCAGTGCAACCTACCCTCTAATGCAGAAGCTGAGACATGTCCTAGTTGATCATGCATTGCAAAATGGTGATAAGGAGGCAAATTCAAGTACCTCAATTTTCCAAAAGATAGGTGCCTTTGAGGAAGAGCTCAAGGCCCTTTTGCCCAAAGAGGTGGAAAGTACCAGGATTGAAATTGAGAATGGAAATCCTGCTATTCCTAACAGAATTAAGGAATGTAGGTCTTACCCATTATACAAGTTTGTGAGAGAAAATTTGGGTACCACTTTGCTGACAGGTGAGAAAGTCAAGTCACCTGGTGAGGATTGTGATAAGGTGTTCTCTGCATTGTGTGAAGGGAGGTTTATTGACCCCTTGTTGGAATGTCTAAAGGAGTGGAACGGTGCTCCTCTACCAATATGCTAG 2145 0.4387 MEFSNVNCNGSLNHLCNGTTSSDPLNWGMAAEALKGSHLDEVKHMVEEFRKPVVLLGGKTLTISQVAAIATHNTGVAVELAEEARSAVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGTENSQTLPHSATRAAMLVRINTLLQGYSGIRFEIMEAIAKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPNGQVLNAKEAFQLAGIEAGFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLSEVLSAVFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPHIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIEILKLMSSTFLVALCQAIDLRYLEENLKSTVKNTVSQVAKRVLTVGVNGELHPSRFCEKDLLKIVDREYVFAYIDDPCSATYPLMQKLRHVLVDHALQNGDKEANSSTSIFQKIGAFEEELKALLPKEVESTRIEIENGNPAIPNRIKECRSYPLYKFVRENLGTTLLTGEKVKSPGEDCDKVFSALCEGRFIDPLLECLKEWNGAPLPIC* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02427 714 CDD PAL-HAL 59 524 IPR001106 -
Rops6g02427 714 FunFam Phenylalanine ammonia-lyase 527 648 - -
Rops6g02427 714 Pfam Aromatic amino acid lyase 61 535 IPR001106 -
Rops6g02427 714 Gene3D - 15 260 IPR024083 -
Rops6g02427 714 PANTHER HISTIDINE AMMONIA-LYASE 18 714 IPR001106 -
Rops6g02427 714 FunFam Phenylalanine ammonia-lyase 261 564 - -
Rops6g02427 714 NCBIfam phenylalanine ammonia-lyase 23 704 IPR005922 GO:0005737|GO:0006559|GO:0016841
Rops6g02427 714 Gene3D - 527 648 IPR023144 -
Rops6g02427 714 FunFam Phenylalanine ammonia-lyase 15 260 - -
Rops6g02427 714 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 196 212 IPR022313 GO:0016841
Rops6g02427 714 SUPERFAMILY L-aspartase-like 23 714 IPR008948 GO:0003824
Rops6g02427 714 Gene3D Fumarase/aspartase (Central domain) 261 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02427 Rops-Chr6 44320238 44325316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02427 8 714 Monolignol Biosynthesis Gene Families AT2G37040 82.320 0.0 1232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02427 K10775 - gmx:100818777 1300.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02427 6 44320238 44325316 Rops6g02427 6 44320238 44325316 ECH