Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02425 ATGGGTAATGTTGAAATCCCCAATTGGCTTAAAGGGTTACCCTTGGCACCTGAATTTCGCCCTACTGATACTGAATTTGCCGACCCAATTGCTTATATTTCAAAGATTGAGGAGGAAGCTGGTAAATTTGGGATATGTAAGATTATCCCACCTTTGCCCAAACCTTCAAAAAAATATGTTTATTCTAATTTGAATAGGTCCCTCATGAAATGCCCTGAATTGGGTCCAGATAACAGTTCTTTAGGTGTTTGTAACTCTTTGAATAGTGGTAGTGATGGGGTGTTGCGAGCTGTGTTTACCACAAGGCATCAAGAACTGGGGCAGAGTGTGAAAAAAAACAAAGGGGCAGTTCAGAATCCACTGTCATGTGTTCATAAGCAAGTATGGCAAAGCGGGGAGGTTTATACACTAGAACAGTTTGAGTCCAAATCAAAATCTTTCGCGAAAAGCATGCTGGGTATGGTGAAGGATGTCTCTCCACTGGTTATAGAGGCTATGTTTTGGAAGGCAGCTTTAGATAAGCCTATATATGTGGAGTATGCCAATGATGTGCCTGGGTCTGCATTTGGAGAATCCAAGGGTCAGTTTTATTATGGTCATAGAAGGCGAAGAAAAAGGACTTATTATAAGAGTAGACGAGATAGCTCTGATTGTAAACAAACTGAAACGTGTAGCATAAGAGATACCCAAAATGATGAGACTAAAGGTGCTTCTGTCCAAAGTCATGCAGACACTTGTTTACAGATGTCTAAATCAGCTATGACTGTGCCGGCATCTTCATCAAATGAAGCTTCACAATCTTGTAATGAAAAGAGTTCAGATGACTGCAATGATATGCAAGGCACTGCTGGTTGGAAGCTTTCAAACAGTCCATGGAATTTGCAAGTTATTGCACGCTCATCTGGCTCACTAACACGTTTCATGCCGGATGATATTCCTGGTGTTACTTCACCCATGGTATACATCGGTATGTTGTTCAGTTGGTTTGCCTGGCATGTAGAGGATCATGAACTTCACAGCATGAATTTTCTTCACACTGGATCATCAAAGACTTGGTATGCTGTTCCTGGAGATTATGCCTTTGCTTTTGAGAAAGTTATCCGCTCTGAGGGTTATGGTGGTAATATTGATCACTTAGCTGCTTTGAAACTTTTGGGCGAGAAAACTACACTTTTATCTCCTGAGGTAATTGTTGCATCTGGGATTCCTTGTTGCAGGTTAATACAGAATCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGGACCCCACAATGGCTTAGAGTAGCTAAGGAAGCTGCAGTGCGTAGAGCTGCAATGAATTATCTTCCCATGCTTTCCCATCAGCAACTGCTTTACTTGCTGACCATGTCTTTTATTTCAAGAGTGCCAAGAACACTATTACCTGGTGTGCGCAGTTCTCGTCTAAGAGATCGTCAGAAAGAAGAAAGAGAGTTTTTAGTAAAACAGGCTTTTATAGAAGATATGCTGCAGGAAAACAAGCTGCTATCCATTCTCCTTGGAAAGGAAGCAACTAAACAAGCTGTTTTATGGAATGCTGATTTACTACCAGATCCCAGCAAAAATTGTCAGTTGCCTTGTTTAGCTTCTACTATAGGGACCTGTATGGCGGACATACCAAATATTAGTTCTGCAGATAATAGTAGTCATCATCTGCTTGACGAGATGAGTTTGTATATGGAGAATCTGACTGATTCATATTTTGGTTGTGATGATCTTCCGTGTCCCTTCCAAACTGATTCAGGAGCATTGGCTTGTGTGGGTTGTGGAATCCTTGGTTTTCCATTTATGACTGTGATACAACCAACTGAGAAATTGATAATGGAACTTCTTCCTGATAATCATCATCAAGTTCAAGATTCCTCTCTGAAGTCTAATGCCTCCCTTCATAGCTCAGTCTCAAGGGATCTTTCCGTTTCTGAACTTTATTCAGCGAAGGATCAAACATTAAACAAGTGCAATAAATTTTGGAACACATCCAGTAAATTTTTGAGGCCACGGATTTTCTGCCTGGAGCATGCTGTTCAGATAGTGGAGATGTTGCAGTGCAAAGGTGGAGCCAATGTGCTTATAATTTGCCATTCAGACTATCAGAAAATAAAGGCACATGCCTGGGCAGTTGCAGAAGAGATACATAGTGCTTTTGATTATAATGAGGTTCCATTAGATATTGCATCCTCAGAAAATTTGGCTCTGATAGATCTGGCAATTGATGGTGAAGAACATATTGAATGTGAAGATTGGACATCTAAACTAGGCATTAACCTACAGTATTGCGTCAATGCAAGAAATAACTCTCCATCTAACCAAGTTCCTTGGACACTAGCATTAAGGATGCTGTTTGATGATAAACGTCCCGGTTCAGAATTTTTATCTTTAAATTGGCCGTCACGGAGAACTCGGTCCATAAGGTCAAATCGTTTAGCTCAGACTAAACCTTCTGACAGCATTCAGATAAAGAAGGGTGATCAATTAGAGGGAAGAATAAATGGCTCCACTGCTGAAAAGAAGCTAATTCAATATTCAAGAAGGAAGTTCAGGTCAAAGCAAAGTTGTTCCTCAGTGGCAAGCAGGGTCCATGAATCCCAAGGGAAGTCCAAAAATGCGTCAGCTTTCTTGAGCAGAGATCATTATAATTTTGTTTCTAAAGATGAGCTTGATGCAGAGAATTTAAGAAGTGATTGTGCATTGTCATGTGTCTCTGCTTCTACTGCAATGTCTCCAACACATCAAGAAATCCAGATTACTGAAATGCCCACTAGTATGAGATTGAATCCAGCAATGTCACAACTTTCAAATTCCTTTTCTGATCATATTTTAATGACTGAAAAAGTTGGGGCAGAGATTGAGAATAAAACCACGCAGGAATTAAATATAGATGGAAAAAATGATTTAGTACTCGGTCATTCCAAGATGCATAACAATACCAGTGTCTCGGAAATATGTGGCAATGAGAGCCAGGATTGTCAGGAAAAGAAATATTCTGGCTCTCTTACAAATGCTACAGACAGAAATAATGATATGTTTAAAAAGAAACAAATTACAGAAGCAATTATCATTGATAGCAACTGTAATAACTTAGATTTGGATGATGAAGGGCATCAAGAATATCAGTCTGCCTGCAAAAGCAACAACAAGGAAACTGTTCTATCTACTGCTTCAATGGTAAACCAACCTACACTTGCCTCTATGGATGGAATTTTGGAAAGTCCAAATAATAATTATGCTGCTGAAATGTTTAGCAATGCTATGTCCTTTAAAGAGACAACTGAGGAAGAAATTAATTCTTTGAGTGAAAGGGACAAGGAAACTCTAATTGATGATAAACCAATAAGTGAACATACTCCAAATGGAGAAGTTTGCGAAGTTCCAAGAGAGCTTTATGCTGCTGCAGACTTCTGTAATACAGTAATATTGGATGCCGAGATGCAGCAAGAAACTCATGTTGAAAAAAGCAACAAAAAGGAAATCAATCAGGCCACTCATGTTTGTGAATTTACAAGAGGGGAGTATGCTGAAGGGTTGAATGATGAAGTTATTTCAGAGTCTGTAAAGCAGTGTCGGGTCCAAATTAAGAATAGAATTAATGAGGAATCTGCTTCTGGTTATGTTACAAAAGGTGATAACAGAAGGATAACTATATCAGAATTAGGATGTTCTGAAGTTTCAGTGGAAACCTGTCCTAAAGAAGACTCCTGTATTCAATTTATTTCGGATAATGAAAAGGAAATGGAAATCCAGCCAATTAATAGAATTCATGAACAACTTTGCTTGGGGACTGAGACATCCTTAAAGGACTCTTCTGTATCAATCCAGGAATGTTCTCAAATTGAGAAAAAGACATGTGATGGAGAAAATCTAAATGGAAGCGAAGTTCATTTGTCACGAGAAAATAGGGAGGTGGAAAGCTGTGAGTTGACTACAGCAGTTCCCAGATCAAATGCTGGGAAGAAGAAAAAGAGGAAAGTGGAAGAGACAACAAAGAACCTATTTGATTGCCACAACTTTATTAGAAGTCCATGTGAGGGGCTGAGGCCAAGAGCTGGGAAGATTGCTACCGGCAAAAGTGGGGGGGACATCAGCCAAAATGACAAGGAAAATCTGGTGGCTAAAAGGGCACGGAGACCTTCTGAAGTTTCGGTGCCTCGCAAGAATAAAAAAGATGATGTTAAAAAGCCCCACAGGTGTGACCTTGATGGTTGCCGTATGAGTTTCATGACTAAGGCTGAGTTACAGATGCACAAACGTAACCTTTGCCCACACAAAGGGTGTGGCAAGAAGTTCAGTTCCCATAAATATGCTATGCTTCACCAACGTGTTCATGACGATGAGAGGCCACTTAAGTGCCCATGGAAAGGTTGTTCCATGGCATTCAAGTGGGCATGGGCAAGGACAGAGCATATACGGGTGCATACTGGGGAGAAACCTTACCAATGCAAGGTTGATGGATGTGGCCTTTCTTTCAGGTTTGTATCAGATTTTAGCAGGCACAGACGGAAAACAGGGCACTACGTGCAATCTCCTGCTTGA 4602 0.4029 MGNVEIPNWLKGLPLAPEFRPTDTEFADPIAYISKIEEEAGKFGICKIIPPLPKPSKKYVYSNLNRSLMKCPELGPDNSSLGVCNSLNSGSDGVLRAVFTTRHQELGQSVKKNKGAVQNPLSCVHKQVWQSGEVYTLEQFESKSKSFAKSMLGMVKDVSPLVIEAMFWKAALDKPIYVEYANDVPGSAFGESKGQFYYGHRRRRKRTYYKSRRDSSDCKQTETCSIRDTQNDETKGASVQSHADTCLQMSKSAMTVPASSSNEASQSCNEKSSDDCNDMQGTAGWKLSNSPWNLQVIARSSGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGSSKTWYAVPGDYAFAFEKVIRSEGYGGNIDHLAALKLLGEKTTLLSPEVIVASGIPCCRLIQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLRVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFISRVPRTLLPGVRSSRLRDRQKEEREFLVKQAFIEDMLQENKLLSILLGKEATKQAVLWNADLLPDPSKNCQLPCLASTIGTCMADIPNISSADNSSHHLLDEMSLYMENLTDSYFGCDDLPCPFQTDSGALACVGCGILGFPFMTVIQPTEKLIMELLPDNHHQVQDSSLKSNASLHSSVSRDLSVSELYSAKDQTLNKCNKFWNTSSKFLRPRIFCLEHAVQIVEMLQCKGGANVLIICHSDYQKIKAHAWAVAEEIHSAFDYNEVPLDIASSENLALIDLAIDGEEHIECEDWTSKLGINLQYCVNARNNSPSNQVPWTLALRMLFDDKRPGSEFLSLNWPSRRTRSIRSNRLAQTKPSDSIQIKKGDQLEGRINGSTAEKKLIQYSRRKFRSKQSCSSVASRVHESQGKSKNASAFLSRDHYNFVSKDELDAENLRSDCALSCVSASTAMSPTHQEIQITEMPTSMRLNPAMSQLSNSFSDHILMTEKVGAEIENKTTQELNIDGKNDLVLGHSKMHNNTSVSEICGNESQDCQEKKYSGSLTNATDRNNDMFKKKQITEAIIIDSNCNNLDLDDEGHQEYQSACKSNNKETVLSTASMVNQPTLASMDGILESPNNNYAAEMFSNAMSFKETTEEEINSLSERDKETLIDDKPISEHTPNGEVCEVPRELYAAADFCNTVILDAEMQQETHVEKSNKKEINQATHVCEFTRGEYAEGLNDEVISESVKQCRVQIKNRINEESASGYVTKGDNRRITISELGCSEVSVETCPKEDSCIQFISDNEKEMEIQPINRIHEQLCLGTETSLKDSSVSIQECSQIEKKTCDGENLNGSEVHLSRENREVESCELTTAVPRSNAGKKKKRKVEETTKNLFDCHNFIRSPCEGLRPRAGKIATGKSGGDISQNDKENLVAKRARRPSEVSVPRKNKKDDVKKPHRCDLDGCRMSFMTKAELQMHKRNLCPHKGCGKKFSSHKYAMLHQRVHDDERPLKCPWKGCSMAFKWAWARTEHIRVHTGEKPYQCKVDGCGLSFRFVSDFSRHRRKTGHYVQSPA* 1534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02425 1533 Pfam JmjC domain, hydroxylase 319 438 IPR003347 -
Rops6g02425 1533 ProSitePatterns Zinc finger C2H2 type domain signature. 1473 1495 IPR013087 -
Rops6g02425 1533 ProSiteProfiles JmjC domain profile. 286 455 IPR003347 -
Rops6g02425 1533 SUPERFAMILY Clavaminate synthase-like 287 452 - -
Rops6g02425 1533 ProSitePatterns Zinc finger C2H2 type domain signature. 1503 1527 IPR013087 -
Rops6g02425 1533 ProSiteProfiles Zinc finger C2H2 type domain profile. 1441 1470 IPR013087 -
Rops6g02425 1533 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 1467 - -
Rops6g02425 1533 Gene3D Classic Zinc Finger 1439 1525 - -
Rops6g02425 1533 SUPERFAMILY beta-beta-alpha zinc fingers 1442 1478 IPR036236 -
Rops6g02425 1533 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Rops6g02425 1533 Gene3D Cupin 9 459 - -
Rops6g02425 1533 SMART cupin_9 286 455 IPR003347 -
Rops6g02425 1533 Pfam jmjN domain 17 50 IPR003349 -
Rops6g02425 1533 ProSiteProfiles Zinc finger C2H2 type domain profile. 1471 1500 IPR013087 -
Rops6g02425 1533 SMART JmjN_1 15 55 IPR003349 -
Rops6g02425 1533 SMART c2h2final6 1441 1465 IPR013087 -
Rops6g02425 1533 SMART c2h2final6 1418 1440 IPR013087 -
Rops6g02425 1533 SMART c2h2final6 1471 1495 IPR013087 -
Rops6g02425 1533 SMART c2h2final6 1501 1527 IPR013087 -
Rops6g02425 1533 ProSiteProfiles Zinc finger C2H2 type domain profile. 1501 1532 IPR013087 -
Rops6g02425 1533 MobiDBLite consensus disorder prediction 1395 1415 - -
Rops6g02425 1533 FunFam Probable lysine-specific demethylase ELF6 1468 1497 - -
Rops6g02425 1533 ProSitePatterns Zinc finger C2H2 type domain signature. 1443 1465 IPR013087 -
Rops6g02425 1533 SUPERFAMILY beta-beta-alpha zinc fingers 1481 1523 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02425 Rops-Chr6 44289122 44300950 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02425 1 913 C2H2 Transcription Factor Family AT5G04240 55.139 0.0 984
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops6g02425 JmjC 2.8e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02425 - - gmx:100799861 2355.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02425 6 44289122 44300950 Rops6g02425 6 44289122 44300950 ECH