Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02419 ATGCCATTCCCTGAAGCACAATCTCAAACCCCTTTTGTTGTGACACTCAACAACCCTTTTGTTCCATTCACTTCCCACTTTTCTGGTCACTCCAACATGTGTAGGTGGCTTCTTTGGTTGCACGTTGTGGTCTTGAGTTTTTTGCTTGGGATGATGCATTGCCAAGAAATGAATGACTATGACCAAGTTGACAACCCTGCTGTTCTTCCCCTCATCACTCAGCTTGTTTATAGTCGAATTTCCAATTTGACATCAGTTTTCAGTCAAGAAATAAGCAAACAGTCCAGTTTCTGTGTCAAAGATCCGGATTCTGATTGGAATCAAGCATTTAATTTCTCATCTGATTTGGGCTTCTTGACTTCTTGCATCAAGAAGACTAATGGAGATATTACAAAACGCTTGTGTACAGCAGCAGAAGTGAAGTTTTACTTAAATAGTTTATTGGAGAGATCTACAAGTGCCACTTATTTAAAGCCTAACAAGAACTGCAATTTAACCTCATGGGTCTCTGGTTGTGAGCCAGGATGGGCCTGTAGTGTTCACTCAAGCCAGAAGATTGACCTTAAAAATTCAAAGGAGATACCTGCAAGAACTTCAAACTGTCAAGCCTGTTGTGAAGGCTTTTTTTGTCCTCATGGCATCACGTGCATGATACCATGCCCTCTAGGTTCCTATTGCCCTCTTGCTACACTCAATAAAACAACTGGCGTATGTCAACCATATCTTTATCAACTGCCTCCAATGCAGCCAAATCATACCTGTGGTGGAGCTAATGTGTGGGCTGATGTTGGTAGCAGTAGTGAAATATTTTGCTCAGCAGGATCATATTGTCCAACAACCACCAAAAGAATTCCTTGCAGTAGTGGGCATTATTGCAGGATGGGTGCCACATCTGAGACAAGATGCTTCAAGTTGAGTTCATGTAATTCACACACAGCAACCCAAAATATGCAAGCATATGGAATTATGCTCATTGCTGCTTTGAGTACTTTGCTACTCATTATATACAACTGTTCTGACCAAGTTCTCACTACTAGGGAAAGGAGTGTGGCCAAATCTAGAGAAGCAGCAGCTAGAAGTGCAAGGAAGACCGCGAATGCACGCCAAAGATGGAAAGTTGCAAAAGATGCTGCTAAGAAGGGTGCAACTGGGCTACAAGTTCAACTATCACGCAAATTCTCTGGTAAGAAGGATGCATCACATCCAGAAAAAGTTAACATGTTGAATCAAGCAGCTTCTGAAACAGATGTGGAATTGTTGCCACGTTCACAACCTATCACTTCAAATACTGCTGCAAGTTCATCTGTGGTGCTGAAGGAAAAGGGAATAAAACCAAGTGGTCTAATGCAGATAATACATGAAATTGAAGATGACCCTGACATCAATGACAACCTTGCTATAGAAATAGAAACTAGAGATAAAAGTGTTACAGGAAATGTGTCAAAGGGAAAACAGCCACATACTCATACCCAAATTTTTAAGTATGCATATGCTCAACTTGAAAAAGAGAAGGCTCAGCAACATGAAAACAAGAACCTTACCTTCTCAGGAGTAATTAAAATGGCTACAAACACTGAAAAAAGTAAAAGGCCTTTTATTGAGATTTCTTTCAAAGATCTGACTCTTACATTGAAAGCCCAAAACAAACAAATATTGAGATATGTTACTGGGAAAATTAAACCTGGCCGCATTACTGCTGTCATGGGTCCATCAGGGGCTGGCAAGACAACATTGCTTTCAGCTCTAGCTGGAAAGGCATTTGGATGCTTGGTTACTGGTTCAATTCTTATAAATGGAAGGAATGAATCAATTCACTCCTATAAGAAAATTATTGGCTTTGTGCCACAAGATGATGTAGTGCATGGAAACCTCACAGTGGAAGAGAATCTCTGGTTCAGTGCACAGTGCAGGCTATCTGCTGACTTGTCAAAACCAGAAAAAGTTCTGGTTGTTGAAAGAGTTATTGAATTCTTGGGGCTTCAATCTGTGCGGAATTCCTTGGTTGGAACTGTGGAAAAGCGAGGGATCTCTGGAGGTCAAAGGAAGCGTGTAAATGTTGGATTGGAAATGGTTATGGAACCTTCACTTTTGTTCTTGGATGAACCCACGTCTGGCTTGGACAGTGCATCATCTCAGCTCCTTCTAAGAGCACTAAGACGTGAATCTCTTGAGGGAGTGAACATTTGCATGGTGGTTCACCAACCCAGCTATGCTTTGTTCAAGATCTTTGATGACTTGATACTTCTGGGTAAAGGTGGTCTTACAGTCTATCATGGATCTGCCAAGAAAGTTGAAGAATACTTTTCAGGCCTAGGGATCCATGTTCCAGAGAGGATTAATCCTCCAGATTACTTCATTGACATTTTGGAGGGCATAGCAGTACCTGGTGGAAGCTCAGGACTAAGTTATAAAGAACTGCCAGTTAGATGGATGCTTCATAACGGATATCCAATACCTCTTGATATGAGGCAGAATGCAGCACAATTTGATATGTCTCAGTGTGTAAATTCAACTAATGAAATAGATTCCAACGGATCTGGTCATGTGGAGAAAACCTTTGCTGGAGAATTATGGCAAGATGTGAGAAACAATGTGGAACTGCATGGGGAGAAGATCAGACTCAATTTTTCGAAATCCAAGGATTTATCTGACCGGAAAACTCCTGGTGTATTCAAGCAATATAAGTACTTTTTAATACGGGTTGGGAAGCAGCGATTACGAGAAGCTAGGATCCAAGCCATAGATTATCTTATTTTGTTACTTGCTGGAGCTTGCCTAGGATCACTTACCAAAGCAAGTGATCAAACGTTTGGTGCAGCTGGGTACACCTATACGGTGATTGCTGTATCTCTTCTATGCAAAATAGCGGCCTTGAGATCCTTTTCTCTGGATAAATTACAGTACTGGAGGGAGAGTGACTCTGGCATGAGCAACTTGGCTTATTTTCTCTCCAAAGACACAATTGATCATTTCAATACAGTGATCAAGCCAGTGGTGTACCTCTCTATGTTCTATTTCTTCACCAATCCAAGATCTACTTTTGCAGATAATTATGTTGTACTGCTTTGTCTTGTATACTGTGTAACTGGCATAGCATATGCATTGTCCATATTTTTTGAACCTGGCGCAGCCCAGCTGTGGTCAGTACTTCTTCCTGTTGTTTTGACTCTCATTGCAACACAACCAAAAGATAATAAAATTTTGAAGTATATAGCTAACTTATGCTACTCTAAGTGGGCTTTACAAGCATTTATTATTGCAAATGCTGAAAGGTATGAGGGAGTGTGGCTCATAAGTCGTTGTGGTTCACTTTTGAAAAATGGCTATAATCTTCATGATTGGAATTTGTGCATATCCATACTTATTCTTATGGGTGTAATTGGCAGGGCAATAGCACTTTTCTGTATGGTCACCTTCAAAAAGAAGTGA 3429 0.4071 MPFPEAQSQTPFVVTLNNPFVPFTSHFSGHSNMCRWLLWLHVVVLSFLLGMMHCQEMNDYDQVDNPAVLPLITQLVYSRISNLTSVFSQEISKQSSFCVKDPDSDWNQAFNFSSDLGFLTSCIKKTNGDITKRLCTAAEVKFYLNSLLERSTSATYLKPNKNCNLTSWVSGCEPGWACSVHSSQKIDLKNSKEIPARTSNCQACCEGFFCPHGITCMIPCPLGSYCPLATLNKTTGVCQPYLYQLPPMQPNHTCGGANVWADVGSSSEIFCSAGSYCPTTTKRIPCSSGHYCRMGATSETRCFKLSSCNSHTATQNMQAYGIMLIAALSTLLLIIYNCSDQVLTTRERSVAKSREAAARSARKTANARQRWKVAKDAAKKGATGLQVQLSRKFSGKKDASHPEKVNMLNQAASETDVELLPRSQPITSNTAASSSVVLKEKGIKPSGLMQIIHEIEDDPDINDNLAIEIETRDKSVTGNVSKGKQPHTHTQIFKYAYAQLEKEKAQQHENKNLTFSGVIKMATNTEKSKRPFIEISFKDLTLTLKAQNKQILRYVTGKIKPGRITAVMGPSGAGKTTLLSALAGKAFGCLVTGSILINGRNESIHSYKKIIGFVPQDDVVHGNLTVEENLWFSAQCRLSADLSKPEKVLVVERVIEFLGLQSVRNSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLFLDEPTSGLDSASSQLLLRALRRESLEGVNICMVVHQPSYALFKIFDDLILLGKGGLTVYHGSAKKVEEYFSGLGIHVPERINPPDYFIDILEGIAVPGGSSGLSYKELPVRWMLHNGYPIPLDMRQNAAQFDMSQCVNSTNEIDSNGSGHVEKTFAGELWQDVRNNVELHGEKIRLNFSKSKDLSDRKTPGVFKQYKYFLIRVGKQRLREARIQAIDYLILLLAGACLGSLTKASDQTFGAAGYTYTVIAVSLLCKIAALRSFSLDKLQYWRESDSGMSNLAYFLSKDTIDHFNTVIKPVVYLSMFYFFTNPRSTFADNYVVLLCLVYCVTGIAYALSIFFEPGAAQLWSVLLPVVLTLIATQPKDNKILKYIANLCYSKWALQAFIIANAERYEGVWLISRCGSLLKNGYNLHDWNLCISILILMGVIGRAIALFCMVTFKKK* 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02419 1142 CDD ABCG_EPDR 533 759 - -
Rops6g02419 1142 FunFam ABC transporter G family member 24 529 771 - -
Rops6g02419 1142 Pfam ABC-2 type transporter 733 1142 IPR043926 GO:0140359
Rops6g02419 1142 Gene3D - 533 770 IPR027417 -
Rops6g02419 1142 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 535 769 IPR027417 -
Rops6g02419 1142 ProSitePatterns ABC transporters family signature. 676 690 IPR017871 GO:0005524|GO:0016887
Rops6g02419 1142 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 273 1129 - -
Rops6g02419 1142 Pfam ABC transporter 554 704 IPR003439 GO:0005524
Rops6g02419 1142 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 535 777 IPR003439 GO:0005524
Rops6g02419 1142 SMART AAA_5 561 753 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02419 Rops-Chr6 44250636 44260528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02419 559 754 Calmodulin-binding Proteins AT2G36910 26.047 3.09e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02419 - - gmx:100775464 1905.95