Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02395 ATGCAAATTGGCAACTTGGAAGAAAGGGACAATAACATTGAATGGAAGCAATCATCTTCAGTAGAAATTCCTGCCGAGTTTTGGAAGCTCCTAACAGTTGCAATCAATGCCTCTACCACCATTGCGTCTTCTCAAACTACAGTTTCTTTCTGTCATTGGACCAAAGACAGTGAGATTCAAACCAGCAGTGAATCGCCCTCTGCTGGGTTTTTCTTTCTTCTCAACCTGACACTATGCAAGCAGTCTCTTTTGACAAATATGACAAGAAAAGCAGGGAAAAAAATCAAACATACTTCAGCAATTCCAGATTTGCTCCCAGTTTGCAAAACAATTATGGCGGCTGCTTCTTCATCTACGCCATTCTTGGGAATCAGAGAAGAAAACTCAAGTCAGATTACACATCATCAATCTACCACAGTTGCTTCCTCAGCTGCTTCCACCACAGTGCCTCAAAAGAAACGGAGGAATCAGCCCGGAACACCATATCCAGATGCGGAGGTGATAGCACTATCTCCAAAGACCCTAATGGCAACAAATAGATTCATATGTGAGGTGTGCAATAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACCTGCCTTGGAAGCTAAAGCAGAAGTCTACAAAAGAGGTAAAGAGAAAGGTTTATCTGTGTCCAGAGCCCACATGCGTCCATCACGATCCTTCAAGAGCTTTAGGAGACCTCACTGGGATCAAAAAGCACTACTCTCGTAAGCACGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCAAAGAAATATGCTGTTCAATCAGATTGGAAAGCACATTCTAAGACTTGTGGCACTAGAGAATACAGATGTGATTGTGGCACCCTCTTCTCTAGGCGTGACAGTTTTATCACTCATAGGGCCTTTTGTGATGCGCTAGCTCAAGAGAGTGCAAGACACTCTAATGGTTTGAACCCTTTGGGGACTCATCATTTGTATGGAACAAATCACATGAGTTTAGGCCTATCCCAAGTGGGTACCCAAATTCCCCAACTGCAAAATCAGAACCAAACAGCCAATAATAACAGCATTTTGCGCCTTGGTAGTGCTGGTGCTGCAAAGTTTGAGCACTTAATCCCACCTTTAAATCAGTCTTCATTTGGACACTCACCACAATCAATGCCTTCCTCAGCTTTCTTCATGACTGACACAAATCAAGCATTTGAAGAACACCAATCTCAACAAGGACCATTTTCAGGCAAGCAACTACATGGTCTAATGCAACTTCCTGATCTTCAAGGAAACACCAATAACCCCAATTCTTCTGCATCAGTAGCTGCTCCTTCCAATCTTTTCAACCTCAGCTTCTTTCCAAATAGCACTGGCACTGGCACCATAGTCCCTGACCAATTCAACAACATGAATGGTAGTAACCAAGGAACAACACTCTATATAAACAACAACCCTGTAAGCGATCAAGTTGGATCAGGTTTGTCTTCACTCTTTGGAAACACAATGCAACATGAAAACGTGTCCCCTCATATGTCTGCCACTGCATTGCTTCAGAAAGCTGCTCAAATGGGTTCAACCACAACCACCAAAGGTTCCTCTCTACTAAGAGGAATGTGTAGTAGTTCCACCACCAACAATGATCCCAAAACTGACAGGGACCTTGTGGCTGATAATATTGCCACTTTTGGAAGTGACCATAGGAGAGAAGGTAGAAGATCAAGCATGGAAAATGATAACCACAATCTTCATGGATTGATCAACTCTTTTGCCAACGGGAACACATCCATGTTTGGCAACATGCAAGGGAACGAAAACAACATTAATGTGAGCTTTGGAGGGTCTGATAAGTTGACATTAGACTTTCTAGGCGTTGGAGGAATGTTGAGAAATATGAGTGAACAACAACAACGTGCCATGGGTACTATGAGTTCTTTGGATCCTGACCTAAAATCAGCACACTCAAGCCAACATTTTGGAAGCTCAACAATGCTATAA 1992 0.4297 MQIGNLEERDNNIEWKQSSSVEIPAEFWKLLTVAINASTTIASSQTTVSFCHWTKDSEIQTSSESPSAGFFFLLNLTLCKQSLLTNMTRKAGKKIKHTSAIPDLLPVCKTIMAAASSSTPFLGIREENSSQITHHQSTTVASSAASTTVPQKKRRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHSNGLNPLGTHHLYGTNHMSLGLSQVGTQIPQLQNQNQTANNNSILRLGSAGAAKFEHLIPPLNQSSFGHSPQSMPSSAFFMTDTNQAFEEHQSQQGPFSGKQLHGLMQLPDLQGNTNNPNSSASVAAPSNLFNLSFFPNSTGTGTIVPDQFNNMNGSNQGTTLYINNNPVSDQVGSGLSSLFGNTMQHENVSPHMSATALLQKAAQMGSTTTTKGSSLLRGMCSSSTTNNDPKTDRDLVADNIATFGSDHRREGRRSSMENDNHNLHGLINSFANGNTSMFGNMQGNENNINVSFGGSDKLTLDFLGVGGMLRNMSEQQQRAMGTMSSLDPDLKSAHSSQHFGSSTML* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02395 663 Gene3D Classic Zinc Finger 235 315 - -
Rops6g02395 663 ProSiteProfiles Zinc finger C2H2 type domain profile. 181 203 IPR013087 -
Rops6g02395 663 MobiDBLite consensus disorder prediction 526 551 - -
Rops6g02395 663 Pfam Zinc-finger double-stranded RNA-binding 181 203 IPR022755 -
Rops6g02395 663 MobiDBLite consensus disorder prediction 638 663 - -
Rops6g02395 663 Gene3D Classic Zinc Finger 164 228 - -
Rops6g02395 663 MobiDBLite consensus disorder prediction 132 164 - -
Rops6g02395 663 ProSitePatterns Zinc finger C2H2 type domain signature. 183 203 IPR013087 -
Rops6g02395 663 MobiDBLite consensus disorder prediction 132 155 - -
Rops6g02395 663 FunFam protein indeterminate-domain 5, chloroplastic-like 235 314 - -
Rops6g02395 663 SMART c2h2final6 257 277 IPR013087 -
Rops6g02395 663 SMART c2h2final6 222 252 IPR013087 -
Rops6g02395 663 SMART c2h2final6 181 203 IPR013087 -
Rops6g02395 663 SUPERFAMILY beta-beta-alpha zinc fingers 180 277 IPR036236 -
Rops6g02395 663 MobiDBLite consensus disorder prediction 526 548 - -
Rops6g02395 663 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 131 636 IPR031140 -
Rops6g02395 663 FunFam protein indeterminate-domain 12-like 160 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02395 Rops-Chr6 43672196 43684725 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02395 151 631 IDZ Gene Family AT2G02070 49.074 9.20e-133 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops6g02395 zf-C2H2_jaz 4.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02395 K25870 - gmx:100780268 720.309