Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02394 ATGGGAAGAAAAGCTAGCTGTGGCAAACAGAATGTGAACAGAGGTGCATGGTCTTCTGAGGAAGACAAAATCCTCCTGAACTATGTTCAAGTCCACGGGAAAGGAAAATGGAGAGAGCTTTCCAAAAGAGCTGGCTTGAAACGTAGTGGGAAAAGTTGTAGACTGCGATGGTTGAATTATCTCAAGCCAGATATCAAGAGAGGAAACATTTCTTCGGATGAAGAAGATCTCATTATCAGACTACATAACCTCCTAGGAAATAGGTGGTCTCTCATTGCGGGGCGATTACCAGGGCGCACGGACAATGAGATCAAGAATTATTGGAATACTTATTTGAGAAAGAAGGTTGAGCAAGAAGAAGCCAACCATAAGAAACACCCAGGTCATAGCAATAAAATTCCTATGAAATTAAGAGTTGAATCTCCTCCTGGGTGCTCAAAAAATAACTCCTTGGCTATCATTGATCCTGCAAAATCTCCACACCCTCTGGTTAAACCTAAATCAGTGAGGTGTACCAAGGTTATGATGCCAACCAATAATGATTCAGTCAACACAATGAATTTAATTACAACAAGCTGGGATACCAAGAACCCTTCTTCTTCCACCTCACAAGATGACCATAATTGCTCATCAGGTTTCTTCAAAGACTTGGACATCGATAGTGACATGTTAATTCCACATGAGGATTGTCATTTTAGTAGGTATGCTTGTGTCGAAGTACCCGAACAATTTGGACATGATGCCTTCAAGTTTGATAATTCAGTCGGTGAAGCATGGTATGGGAATTGGATTCTTGACGACTATTTTCCACTAGAACAAGCTGAGGATTTTTCTTCATTTCCAACATTTCTGATATAA 858 0.4044 MGRKASCGKQNVNRGAWSSEEDKILLNYVQVHGKGKWRELSKRAGLKRSGKSCRLRWLNYLKPDIKRGNISSDEEDLIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTYLRKKVEQEEANHKKHPGHSNKIPMKLRVESPPGCSKNNSLAIIDPAKSPHPLVKPKSVRCTKVMMPTNNDSVNTMNLITTSWDTKNPSSSTSQDDHNCSSGFFKDLDIDSDMLIPHEDCHFSRYACVEVPEQFGHDAFKFDNSVGEAWYGNWILDDYFPLEQAEDFSSFPTFLI* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02394 285 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops6g02394 285 FunFam MYB-related transcription factor 13 66 - -
Rops6g02394 285 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 203 - -
Rops6g02394 285 CDD SANT 16 61 IPR001005 -
Rops6g02394 285 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops6g02394 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops6g02394 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops6g02394 285 SMART sant 66 114 IPR001005 -
Rops6g02394 285 SMART sant 13 63 IPR001005 -
Rops6g02394 285 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops6g02394 285 Gene3D - 6 67 - -
Rops6g02394 285 CDD SANT 71 112 IPR001005 -
Rops6g02394 285 Gene3D - 70 136 - -
Rops6g02394 285 FunFam Transcription factor TT2 70 139 - -
Rops6g02394 285 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops6g02394 285 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02394 Rops-Chr6 43659963 43661044 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02394 7 133 MYB Transcription Factor Family AT3G13540 63.281 6.62e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops6g02394 Myb_DNA-binding 7.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02394 K09422 - gmx:100794570 372.474