Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02392 ATGGTTACTATGCAAGATGACACAGGGTTTGGAAGTGGTCTTCACAATAATACAGCTAAGGCTGTAGGCATTATGGTTGGTGGTGCAGCTTTTATACTTTTGGCATTGGGTATTTATTTCTTATGGAAGAAGAGGAAATTGCAATGTATATTGAAAGGGAAAAATAGACACAGAGGTTCTATGGAAAGAAGTCAGGATTTGCTAATGACTGAGGTGGTGTTTTCAAGTAATAGGGAACAGTCAGGTGAACGGAACTTGGATGAACTAGAATTGCCATTGTTTGATTTTAATACCATATCAATGGCTGCAAACAACTTCTCTGAAGAAAATAAACTTGGACAAGGAGGCTTTGGTAGTGTTTATAAAGGCAGGTTATTGGAAGGTCAGGACATTGTTGTGAAGCGATTGTCAAAAAACTCTGGGCAAGGTGTTGAAGAATTTAAGAATGAAGTCAAGTTAATTGCCAAACTTCAACATCGAAATCTTGTTCGGCTACTTGGTTGCAGCATTCAGATAGATGAGAAGATGCTAGTGTATGAGTACATGGAAAATAGAAGCCTTGATGCCATTTTGTTTAACAAAGCAAAAAGATCCTCACTGGACTGGAAAAGGCGCTTCAACATTATAGGTGGAATAGCTAGAGGGCTTCTTTATCTTCACCAAGATTCCAGATTTAGGATCATCCATAGGGATCTTAAGGCAAGCAACATTTTACTTGACAAAGAGATGAACCCAAAGATATCAGACTTTGGAATGGCTAGAATTTTTGGTACGGATGACGGAAGCAAATACAAAGGAGAGTTGTTGGAACATAGTGAGTACCAATGTAACACATTAACACTCTCCAAAAGAACCAAGCTTAATGATCTTACTGTTTATAAATATTTTTCTTCCGTGCGGTGGCTATATGTCCCTGAATATGCTATGGATGGGATCTTCTCGGTGAAATCGATGTTTTTAAGTTTTGGGGTTCTTGTCTTTGGAGATTATAAGTGGAAAAAGAACAGAGGGTTCTATTATGCAAACAAGGAATTGAATCTTCCGGGGCATGTAGGTGGATGA 1062 0.3842 MVTMQDDTGFGSGLHNNTAKAVGIMVGGAAFILLALGIYFLWKKRKLQCILKGKNRHRGSMERSQDLLMTEVVFSSNREQSGERNLDELELPLFDFNTISMAANNFSEENKLGQGGFGSVYKGRLLEGQDIVVKRLSKNSGQGVEEFKNEVKLIAKLQHRNLVRLLGCSIQIDEKMLVYEYMENRSLDAILFNKAKRSSLDWKRRFNIIGGIARGLLYLHQDSRFRIIHRDLKASNILLDKEMNPKISDFGMARIFGTDDGSKYKGELLEHSEYQCNTLTLSKRTKLNDLTVYKYFSSVRWLYVPEYAMDGIFSVKSMFLSFGVLVFGDYKWKKNRGFYYANKELNLPGHVGG* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02392 353 ProSiteProfiles Protein kinase domain profile. 106 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02392 353 ProSitePatterns Protein kinases ATP-binding region signature. 112 134 IPR017441 GO:0005524
Rops6g02392 353 Pfam Protein kinase domain 107 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02392 353 SUPERFAMILY Protein kinase-like (PK-like) 87 327 IPR011009 -
Rops6g02392 353 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 71 181 - -
Rops6g02392 353 Gene3D Transferase(Phosphotransferase) domain 1 182 336 - -
Rops6g02392 353 SMART serkin_6 106 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02392 353 FunFam Os07g0541700 protein 182 268 - -
Rops6g02392 353 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 25 339 - -
Rops6g02392 353 Gene3D Phosphorylase Kinase; domain 1 80 181 - -
Rops6g02392 353 Pfam Receptor serine/threonine kinase 62 96 IPR022126 GO:0004674
Rops6g02392 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02392 Rops-Chr6 43611988 43613883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02392 3 339 Receptor kinase-like Gene Family AT4G23190 45.401 1.29e-84 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops6g02392 Pkinase 1.5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02392 - - gmx:106799702 473.011