Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02391 ATGACTGAAGAATGTGCTGGAAACACAGTTGCCACCTCTAATACCCCATTAAACTGGTGGTATCTCCAGTCAAATTCTCTTTCTTCTTGGATGGATACTAAACAAGCATGGAACAACCAAATAAACCCCAACTCTTCCTCTTCTTGTGAGGAGGATATTTCTGTTTCTACATCTTTCACTAATGCCTCCAACCATTCAAGCCTCACCGTTGAATCCTCTCGCAGACTTGTTGAGCCACATGCACCTTCCTCCAACGAGTTGATGGGAGAACATGCTTCAGATAATCAACTTTGGAGTCATGTTCTATCAGGTGTGGGATCGAATGGTGAGTTGCACAACAACCAAGAAATTGGAGAGAATTTTCTTGATGCACTGTCATCTAAAAGCATGACAAGCACTATGTTTGAACCAGCCTGTGACTACTTGAAGAAACTTGATACCAGTTGGGAGTATAGTGGTTCAACTCCATTCAATAGTCTTGAGAAGCATTTAAATGGGTTTAGTGAGGCAGTGATTGAGAATAATGAAAGGTTGACCAAGTTATCTAACCCTGTAAGCACTTGGTCTATTGCCCCACCAGACCCTGAAGTTAATAGTAGCCACTTTGATCCACAATCAAACAACATGTCTTTGAATTCTTCTTCCATGGATCACTACCCACAATCTGACCCTTGTCATTTCAAACAACTTTTTGGAGATTCCTCGGCAAGTAAAAATTCTGGGGTGTTCCCTTGTTATGATCAGGACATGAAGGTCAAGCAAGAATACCATGCAAGTGAAGTTCCAGGAGCTGTATTTGGAAAATCATTTAATACAAATGGATATCAAAATGGACTTAATGGCCTTTCAGTGGGAGACAGTGGAAAATTTTATCATGGACTCCCCAATCTTTCACCATGCACAAGAAATTTCTCAGATGTTATTTCGTTTAACAGTCGGCTAGGAAGGCCAGTTCTTGGAATCCATGGACAGAGGCCTAGTGTGAAATTCTTAAACTTACCTGAATCAAAGAAGCAGGACCTTCAGAAACCAGCACCGATAAGAACCACGAATGGAATCGGAGGAGAGAACACATCACGTGAAGCAAAGAAGAAAAGATCTGAGGAATCATCAGAAGCAAATTTGAAAAAGCCTAAGCAAGATACATCAACAGCTTCTTCAAAGGTGCAGGCACCCAAAGTCAAGCTAGCGGACAAGATCACATCCCTTCAGCAAATTGTGTCTCCATTTGGAAAGACAGATACAGCATCGGTGCTGTTTGAAGCAATAGGGTACATAAAGTTTCTTCAAGAACAAGTCCAGCTACTGAGCAACCCTTACTTGAAGACTAATTCTCACAAGGATCCACGGGGGAGCTTGGATAGAAAAGATAAGGAGGAGGCAAATCTAGACCTTAGGAGCAGAGGTCTTTGTTTAGTTCCCACTTCATGTACCCCTCTAGTTTACAGAGAAAACACTGGACCAGATTACTGGACACCAGCTTACAGAGGATGTTTGTATAGGTGA 1506 0.419 MTEECAGNTVATSNTPLNWWYLQSNSLSSWMDTKQAWNNQINPNSSSSCEEDISVSTSFTNASNHSSLTVESSRRLVEPHAPSSNELMGEHASDNQLWSHVLSGVGSNGELHNNQEIGENFLDALSSKSMTSTMFEPACDYLKKLDTSWEYSGSTPFNSLEKHLNGFSEAVIENNERLTKLSNPVSTWSIAPPDPEVNSSHFDPQSNNMSLNSSSMDHYPQSDPCHFKQLFGDSSASKNSGVFPCYDQDMKVKQEYHASEVPGAVFGKSFNTNGYQNGLNGLSVGDSGKFYHGLPNLSPCTRNFSDVISFNSRLGRPVLGIHGQRPSVKFLNLPESKKQDLQKPAPIRTTNGIGGENTSREAKKKRSEESSEANLKKPKQDTSTASSKVQAPKVKLADKITSLQQIVSPFGKTDTASVLFEAIGYIKFLQEQVQLLSNPYLKTNSHKDPRGSLDRKDKEEANLDLRSRGLCLVPTSCTPLVYRENTGPDYWTPAYRGCLYR* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02391 501 MobiDBLite consensus disorder prediction 332 391 - -
Rops6g02391 501 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 99 479 - -
Rops6g02391 501 MobiDBLite consensus disorder prediction 343 357 - -
Rops6g02391 501 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 380 429 IPR011598 GO:0046983
Rops6g02391 501 MobiDBLite consensus disorder prediction 64 91 - -
Rops6g02391 501 Gene3D - 392 448 IPR036638 GO:0046983
Rops6g02391 501 MobiDBLite consensus disorder prediction 358 376 - -
Rops6g02391 501 CDD bHLH_AtbHLH_like 395 437 IPR045239 -
Rops6g02391 501 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 395 444 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02391 Rops-Chr6 43599718 43602800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02391 23 501 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 33.806 4.37e-46 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02391 - - gmx:100527800 790.801