Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02387 ATGATGCCCCCTGAGCAAGAAACCAATATTGCACCAAACATTCCACCCATCACAAACCGATCCGAAAACACCTCAATCCATGTCGAACCAGAGGGTTCTTGTTCTTCCACTAACAAAATCAAACCAAGTTTTGATGATAACGCCGTTTCTACACAGCTTCACCCTCAACCAACAACAACACCACCAACCTCATTTTCAATTCTTCATCAATCCCTCCATCCAATTACCCTAAAGTTTGAAGATGTTTCGTATAACATAACCTTCCCAAGCAAAAAGAATAAGAAGGGTTGTGTTTTATCAAAAGAGGGAAAGGTGACAAGGAAAGTACTGAGTGGCGTGACGGGGATAGCGAGTCCCGGCGAGTTAACGGCAATGTTGGGTCCCTCCGGGAGCGGCAAGACAACCTTGCTCACCGCCCTGGCGGGAAGGCTCTCCGGAAAAGTCTCCGGAAGTATAACATACAACGGCAACTCAGACCCCAACTGCATGAAACGCAAGATAGGGTTTGTATCACAAGACGACGTCGTGTACCCTCACCTCACGGTGCTAGAAACACTCACCTACGCGGCACTGTTGAGGTTGCCCAAGACTCTGACCAGGGAAGAGAAAAAGGAGCATGCAGAGAGGGTGATCGTTGATCTTGGCCTCACACGGTGTCGTAACAACCCCGTCGGTGGCTGCATGGGGCTGTTCCGGGGAATTTCCGGTGGGGAGAGAAAACGGGTCAGTATCGGGCAAGAGATGTTGGTGAACCCGAGTTTGTTGTTTCTGGATGAACCAACTTCGGGTTTGGATTCCACGACGGCTCAGCTCATCGTGTCGGTGCTCCAGGGACTCGCCCGTGCCGGCAGGACCGTGGTCACCACCATTCATCAACCATCGAGCCGGTTGTATAGGATGTTTGATAAGGTTGTAGTGTTGTCTGATGGGTACCCCATTTACAGTGGCCATGCGGGTCGGGTCATGGATTATCTTGAATCTGTTGGGTATGTGCCAGCTTTCAACTTTGTCAACCCTGCTGATTTTCTGCTTGACCTTGCTAATGGAATAGTTGCTGATGTCAAACATGATGATCAGATAGACCATCATGAGGATCAATCTTCAGTCAAACAGTCCTTAATTTCATCCTTTAAGAAGAATCTGTATCCTGCTATTAAAGAAGAGATTCGGCAAAATAACAGTGAATCAGTGGTTTTTACATCAGGAACACCTAGACGTTCTGATAACCAATGGGCCACAAGCTGGTGGGAGCAATTCAAGGTGTTGCTTAAGAGGGGTTTACAGGAGAGGAGGCATGACTCGTTTTCTGGATTAAGGATTTTCCAAGTCTTGTCTGTATCCATTCTCTCAGGACTTTTGTGGTGGCACTCTGATCCCTCACATATACAAGATCAGGTAGGACTCCTCTTCTTCTTCTCCATCTTCTGGGGATTCTTCCCTCTCTTTAACGCCATCTTTGCATTTCCTCTGGAGAGGCCAATGCTAATAAAAGAAAGATCATCAGGCATGTACCATCTCTCCTCCTACTATGTTGCTCGGATGGTGGGAGACTTACCAATGGAGCTTGTACTCCCTACAATTTTTGTAACCATCACCTACTGGATGAGTGGTCTCAAGCCTTCCCTGGTCACATTTGTGTTAACCCTCTTGATCATGCTTTTTAATGTTCTGGTCTCTCAAGGAATAGGCCTAGCACTTGGGGCCATTCTCATGGATGTGAAGCAGGCCACAACTCTAGCTTCAGTGACCATGCTGGTGTTTCTCTTAGCTGGTGGTTACTACATTCAGCAAATGCCTTCTTTTATAGCTTGGTTGAAGTACATTTCTTTCAGTCATTACTGCTATAAGCTGCTTGTAGGAGTCCAGTATTCAGTAAATGATGTCTATGAGTGTGGACCAGGGTTGCATTGTAGGGTAAGAGATATTCCAGCCATAAAGTGTCTGGGGTTTGATAATATGTGGGGAGATGTGGCTGCATTGACTGTAATGTTGATTGGATACAGAGTTGTGGCATATCTAGCTTTGAGGATGGGGCAGCCTCACTGA 2046 0.4682 MMPPEQETNIAPNIPPITNRSENTSIHVEPEGSCSSTNKIKPSFDDNAVSTQLHPQPTTTPPTSFSILHQSLHPITLKFEDVSYNITFPSKKNKKGCVLSKEGKVTRKVLSGVTGIASPGELTAMLGPSGSGKTTLLTALAGRLSGKVSGSITYNGNSDPNCMKRKIGFVSQDDVVYPHLTVLETLTYAALLRLPKTLTREEKKEHAERVIVDLGLTRCRNNPVGGCMGLFRGISGGERKRVSIGQEMLVNPSLLFLDEPTSGLDSTTAQLIVSVLQGLARAGRTVVTTIHQPSSRLYRMFDKVVVLSDGYPIYSGHAGRVMDYLESVGYVPAFNFVNPADFLLDLANGIVADVKHDDQIDHHEDQSSVKQSLISSFKKNLYPAIKEEIRQNNSESVVFTSGTPRRSDNQWATSWWEQFKVLLKRGLQERRHDSFSGLRIFQVLSVSILSGLLWWHSDPSHIQDQVGLLFFFSIFWGFFPLFNAIFAFPLERPMLIKERSSGMYHLSSYYVARMVGDLPMELVLPTIFVTITYWMSGLKPSLVTFVLTLLIMLFNVLVSQGIGLALGAILMDVKQATTLASVTMLVFLLAGGYYIQQMPSFIAWLKYISFSHYCYKLLVGVQYSVNDVYECGPGLHCRVRDIPAIKCLGFDNMWGDVAALTVMLIGYRVVAYLALRMGQPH* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02387 681 Gene3D - 74 330 IPR027417 -
Rops6g02387 681 MobiDBLite consensus disorder prediction 11 63 - -
Rops6g02387 681 SMART AAA_5 119 312 IPR003593 GO:0016887
Rops6g02387 681 ProSitePatterns ABC transporters family signature. 234 248 IPR017871 GO:0005524|GO:0016887
Rops6g02387 681 Pfam ABC-2 type transporter 291 355 IPR043926 GO:0140359
Rops6g02387 681 Pfam ABC-2 type transporter 417 623 IPR013525 GO:0016020|GO:0140359
Rops6g02387 681 Pfam ABC transporter 113 262 IPR003439 GO:0005524
Rops6g02387 681 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 77 334 IPR003439 GO:0005524
Rops6g02387 681 MobiDBLite consensus disorder prediction 1 63 - -
Rops6g02387 681 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 45 672 - -
Rops6g02387 681 CDD ABCG_EPDR 74 316 - -
Rops6g02387 681 FunFam ABC transporter G family member 22 97 328 - -
Rops6g02387 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 327 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02387 Rops-Chr6 43522826 43526697 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02387 108 310 Calmodulin-binding Proteins AT2G36910 30.332 5.05e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02387 K05681 - gmx:100792991 1169.07