Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02375 ATGACTGGACCATCGTGGTTGGTGGACAAAAGTAGAATTGCAACCAAAATTAAGTGTGCATCTGGAGGACGTGGAAAAGTTATATGGAAAAGCAATCCTACAAGAGCTTGCCCAAATTGTCAACATGTTATTGACAACAGTGATGTAGCACAAGAGTGGCCTGGATTACCCAAAGGCGTTAAATTTGATCCATCTGATCAAGAGATCATATGGCATTTGCTTGCAAAAGTTGGTATGGGAATTTCAAAACCCCACCCTTTCATTGATGAATTTATTACTACTCTTGAAGTGGATGATGGTATTTGTTATACTCATCCTCAACATTTACCAGGTGTCAAGCAAGATGGAAGTGCTTCCCACTTTTTCCATAGAGCAATCAAAGCTTATAATACTGGCAGTCGAAAGCGCCGAAAAATATATGGTCAGGATTTTGGTGATGTCCGCTGGCACAAGACTGGAAGGACTAAACCTGTCATCTTGAATGGAGTTCAAGAAGGCTGTAAAAAAATTATGGTTCTGTATATGAGCCTGGGGAGGGGAGGAAAAGCTGAGAAAACTAATTGGGTTATGCATCAATATCATCTAGGAATAGAAGAGGATGAAAAGGATGGAGAGTATGTTATTTCTAAAGTGTTTTACCAGCAACAAGAAGTCAAATTGGGTGAAAAAAACCAGGATATTCCTGAAACCACTGAAGCAACTATTGTGAAAGTGGATCCGGTCACTCCCAAATCCGTGACTCCTGAACCTCCTCGTAATGAAAAGCGATGTTCAAATCTAGACCAAGAACAAGAATCACATCATATTCCTCAGCGAAATGTGAAAATTGCACTGTCTTCTGCTCACCATATTCCATCAAAGCATCATCAGATGGATTGTATAGATGACATTCGGGCTGATTGTGAAGAGCTTGCAAAAAATGATCAATCAATTGTAGAAACTCAAAGTAATGAAGGGATAGATAAAACAGAAAATAATGCTGATGAAGACTCAAAATGGTGGGATAGTGAGTCACAGAATCTGTTGGATTCACAACAACTGGTTGAAGCATTGTCCATGTGTGATGATCTCCTTCAAAGCCAGTCTCCCAATAGGGATGGGGAAAATGGAGAACATAAGGAACGACCTAGTCTTTCTGTTTATGCTCATCTAGGACCAGAGCATCTGAAGAAAGATATTAAAGATTGCCAAAATGTTGTAATTGACACTGCTAATGTAGAGCTTGAGACACCACCTTCAGAGTTTCGACTAAGTCAACTGGAATTCAGTTCTCAGGATAGCTTTATTTCCTGGGGTGGCAGCATTGCAATAAACTAA 1317 0.3986 MTGPSWLVDKSRIATKIKCASGGRGKVIWKSNPTRACPNCQHVIDNSDVAQEWPGLPKGVKFDPSDQEIIWHLLAKVGMGISKPHPFIDEFITTLEVDDGICYTHPQHLPGVKQDGSASHFFHRAIKAYNTGSRKRRKIYGQDFGDVRWHKTGRTKPVILNGVQEGCKKIMVLYMSLGRGGKAEKTNWVMHQYHLGIEEDEKDGEYVISKVFYQQQEVKLGEKNQDIPETTEATIVKVDPVTPKSVTPEPPRNEKRCSNLDQEQESHHIPQRNVKIALSSAHHIPSKHHQMDCIDDIRADCEELAKNDQSIVETQSNEGIDKTENNADEDSKWWDSESQNLLDSQQLVEALSMCDDLLQSQSPNRDGENGEHKERPSLSVYAHLGPEHLKKDIKDCQNVVIDTANVELETPPSEFRLSQLEFSSQDSFISWGGSIAIN* 439
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02375 438 MobiDBLite consensus disorder prediction 238 269 - -
Rops6g02375 438 MobiDBLite consensus disorder prediction 310 332 - -
Rops6g02375 438 SUPERFAMILY NAC domain 41 214 IPR036093 GO:0003677|GO:0006355
Rops6g02375 438 Gene3D NAC domain 65 219 IPR036093 GO:0003677|GO:0006355
Rops6g02375 438 ProSiteProfiles NAC domain profile. 56 214 IPR003441 GO:0003677|GO:0006355
Rops6g02375 438 MobiDBLite consensus disorder prediction 358 377 - -
Rops6g02375 438 FunFam NAC domain-containing protein 8 65 218 - -
Rops6g02375 438 Pfam No apical meristem (NAM) protein 57 195 IPR003441 GO:0003677|GO:0006355
Rops6g02375 438 MobiDBLite consensus disorder prediction 249 269 - -
Rops6g02375 438 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 397 IPR044799 GO:0003700
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Rops6g02375 Rops-Chr6 43294014 43299002 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02375 19 221 NAC Transcription Factor Family AT1G28470 54.545 1.07e-72 229
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops6g02375 NAM 1.7e-20 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02375 - - gmx:100787702 722.235