Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02372 ATGCAAACGCACTCTTTCTCATGCATATCCTCTTGTGGGAGTGAGAGTTCTTGCTTAGAAGCTGATGAGGTTAATGATGAAGAGTCCATCTCCCTCTCCCTCTCCCTTGGCCCTCCAGGTCCTAGCCACCAAAAATCAAGAGTCTCTACCCCAAACCACTCTGTTACTATGATGCCTTACCAGCAAAACCCTATCTTTGATCACCATAGTGGTGTAACAGTTGCCCTCCACATTGGCCTTCCAACCACCACCACCAAACCTGAGTATTCCTCTTCCACTCCGATTCAGGGTCAATATTGGATCCCTACTCCTGCTCAAATCCTTATGGGACCCCCCCAGTTTTCTTGCACTGTCTGCAACAAAACTTTCAACCGTTTCAACAACAAGCAGATGCATATGTGGGGACATGGATCACAATATAGGAAAGGACCCGATTCATTGAAAGGGTCAAAACCAACTTCTTCAATGCTGAGGCTACCCTGCTATTGTTGTGCTGAGGGTTGCAAGAACAACATAAACTATCCAAGGTCAAGACCACTCAAGGATTTCAGGACCCTCCAAACACACTACAAGAGAAAGCATGGAGTGAAGTCATTCGAATGCAGGAAGTGTAGGAAGCCATTTGCAGTGCGAGGAGATTGGAGGACACACGAGAAGAATTGTGGGAAGCTTTGGTTCTGCATCTGTGGTTCTGATTTCAAACACAAGAGGTCCCTTAAAGATCATGTTCGTGCTTTCGGTAATGGCCATGCACCTCACATCTTAAGTTGTGAACAGTTGGCTGAAGAAAAAGCCAAAGAAAATGAAGATTACAACGAAGGTGATAACGGCGAAGTGAAAAAGAGTAAGGAGTGCGAGAAGACGGAGACAAACAATGAAATGAAAGCTAAGGTTCTTGCATTAAATGTTTCAAGTGGCAGTCTTATCAAATTAAAGGACGTTCTCTTTCAGTGTTACTTTTCCTGTGACATTCAGAGAGTGAGAGAGTCACGTAACGAAAGTAATCAAGAGTATTCAGTGGCTGCAGATGAGAGTGCAGTCACAGATTCTACTGTTCTTAACTATGCATTCGCTTGCCAATACCATAGATATTGA 1095 0.442 MQTHSFSCISSCGSESSCLEADEVNDEESISLSLSLGPPGPSHQKSRVSTPNHSVTMMPYQQNPIFDHHSGVTVALHIGLPTTTTKPEYSSSTPIQGQYWIPTPAQILMGPPQFSCTVCNKTFNRFNNKQMHMWGHGSQYRKGPDSLKGSKPTSSMLRLPCYCCAEGCKNNINYPRSRPLKDFRTLQTHYKRKHGVKSFECRKCRKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGNGHAPHILSCEQLAEEKAKENEDYNEGDNGEVKKSKECEKTETNNEMKAKVLALNVSSGSLIKLKDVLFQCYFSCDIQRVRESRNESNQEYSVAADESAVTDSTVLNYAFACQYHRY* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02372 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
Rops6g02372 364 PANTHER ZINC FINGER PROTEIN WIP2 25 268 IPR043584 GO:0003700|GO:0010468
Rops6g02372 364 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Rops6g02372 364 SUPERFAMILY beta-beta-alpha zinc fingers 114 219 IPR036236 -
Rops6g02372 364 MobiDBLite consensus disorder prediction 29 54 - -
Rops6g02372 364 FunFam Zinc finger protein WIP2 168 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02372 Rops-Chr6 43208361 43209931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02372 26 256 C2H2 Transcription Factor Family AT1G13290 68.333 6.64e-113 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops6g02372 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02372 - - aprc:113870355 429.098