Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02364 ATGTCTGTGTCTGTCACATTCAGCAAATGTCAAACCTTTTCTTTTGTGAACCCAAACAGAACCCAAATTCTGCAACTTCCAATAACCATAACATTACCCGACAAAAGAAATCATTCCAATCTTTCTTCTTCTTCTTCTTCCATTTCATGTGATTGGTCCTTTACTAGGATAGCAGCAACAACATACCCTTCCTTCACTCCCTCCACCACAAAAAACCGCCATTGGATGGTGCTCATGGACAAGCCTCCTCATGGGGCCAATTCCAAGCTACAAGTCATTGATTATTATGTCAAGACTCTACAGGCAGTTCTGGGCAGTGAGAAAGATGCTCAAATGTGTCTATATGATGCTTCCTGGGATACACACTTTGGTTTTTGTTGTCACATTGATGAAGAAATATCCTCCCAGCTTGCCAGTTTACCTGGGGTCTTGTCCGTTAGGCCTGATCCGGATTTCAACTCTTTGAAAAAGGACTATAGTTTATCAAGTGGCCAGGCAGGTAATCCATCAAGATTACAAACTAATACCAATATGTTGTTCCCTGCTGGAAATTCAAAGCATTGGCTTGTTAGAATGGATAAACCTGGGGTTGAGGTTGTTACCAAGGCCCAGATTGTCGATTATTATGCTCAAATTTTGACCAAGGTCATGGGAAATGAGAAGGATGCACAAATGTGTATATATCATGTTTCCTGGAAAACCAACTTTGGCTTTTGTTGTGAACTTGATGAGGATTGTGCACAAGAACTAGCTGGTGTGCCTGGGGTCTTATCAGTCCAGCCAGATGACAATTTTGAGTCCGAAAATAAGGATTATGAAGGTAGTAACTTGGAAAATAGTTTGAATGTGCCAAACTTTTCTGAAGCAAGTCAGGCTTCCTTGAAAACAAAGAAACTTTTTGTGACAGGGTTATCATTTTATACTTCTGAGAAAACCTTACGTGCAGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAGTTATCATGGATAAAATTTCAAAAAGGTCCAAGGGTTATGCATTTGTTGAATACACCACAGAGGAGGCTGCAAGTGCAGCACTGAAAGAGATGAATGGCAAGATTATCAATGGCTGGATGATAGTGGTAGATGTTGCCAAGAGTAACCCACCAAGATACAACAGGGATCGTGCCAGACCATCTGCTTGA 1170 0.4103 MSVSVTFSKCQTFSFVNPNRTQILQLPITITLPDKRNHSNLSSSSSSISCDWSFTRIAATTYPSFTPSTTKNRHWMVLMDKPPHGANSKLQVIDYYVKTLQAVLGSEKDAQMCLYDASWDTHFGFCCHIDEEISSQLASLPGVLSVRPDPDFNSLKKDYSLSSGQAGNPSRLQTNTNMLFPAGNSKHWLVRMDKPGVEVVTKAQIVDYYAQILTKVMGNEKDAQMCIYHVSWKTNFGFCCELDEDCAQELAGVPGVLSVQPDDNFESENKDYEGSNLENSLNVPNFSEASQASLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKSNPPRYNRDRARPSA* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02364 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 365 IPR000504 GO:0003723
Rops6g02364 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 375 IPR000504 GO:0003723
Rops6g02364 389 SMART rrm1_1 298 371 IPR000504 GO:0003723
Rops6g02364 389 FunFam Organelle RRM domain-containing protein 1, chloroplastic 176 265 - -
Rops6g02364 389 FunFam Organelle RRM domain-containing protein 1, chloroplastic 266 389 - -
Rops6g02364 389 SUPERFAMILY RNA-binding domain, RBD 288 386 IPR035979 GO:0003676
Rops6g02364 389 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 59 153 IPR037045 -
Rops6g02364 389 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 177 266 IPR037045 -
Rops6g02364 389 Gene3D - 267 389 IPR012677 -
Rops6g02364 389 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 170 366 IPR039206 GO:0016554
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02364 Rops-Chr6 43078402 43082303 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02364 288 387 C2H2 Transcription Factor Family AT2G19380 33.333 5.89e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02364 - - gmx:100791652 639.802