Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02344 ATGATTTCATCTGGGATTAACTTGGTGATGACTGTGATTGGGTTTGCGGTGAGCACCATGTTCATTGTTTTTGTCTGCACCAGGCTCATCTGTGCTCGAATTCACTTGAATGCTTCAAGGAGAGCTTTTACTATCGCTTCCAGATCCAATCTCAGCATGATGGAGCGGGGTTGCCAAGGTCTTGAACGCATAGCTGTAGCCAAATTTCCAGTAAAGAAGTACAGTGACAAGTTTTTTGCTGCTGAGGAAAATTCTCAATGCACAGTCTGCCTCTCAGAATACCAAGGTGAAGATATACTGCGTATCCTCCCTTATTGTGGACACTCCTTCCATGTGACCTGCATAGACTTATGGCTGCAGCAGAATTCCACGTGTCCTGTTTGTCGAATATCATTGCACGAATTTCCCGAGAGAAAGAGATTAATGCAACCCTTGTTTAGCTCTGCTTCTCAACCTCATTATGGCATGGAATCCTTTGACACTCATCATTATCACTGTATAATGGCTGATAATGTACTATCACCTAGAACCCCTGATAACCATGGGGTGAACCCTGTACAAGAGGATCATTTTCCATCTGAGGGTGATGGAGCAGCTGCTATAGACAATATTACCTGTTTAAGTCAGGGTGATTTCATCAAAGATGAAGGGAAGAAGCATGTAGAGAGCCCATCGAATTTCTAA 684 0.4342 MISSGINLVMTVIGFAVSTMFIVFVCTRLICARIHLNASRRAFTIASRSNLSMMERGCQGLERIAVAKFPVKKYSDKFFAAEENSQCTVCLSEYQGEDILRILPYCGHSFHVTCIDLWLQQNSTCPVCRISLHEFPERKRLMQPLFSSASQPHYGMESFDTHHYHCIMADNVLSPRTPDNHGVNPVQEDHFPSEGDGAAAIDNITCLSQGDFIKDEGKKHVESPSNF* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02344 227 CDD RING-H2_EL5-like 86 129 - -
Rops6g02344 227 SMART ring_2 87 128 IPR001841 -
Rops6g02344 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 134 IPR013083 -
Rops6g02344 227 SUPERFAMILY RING/U-box 81 135 - -
Rops6g02344 227 Pfam Ring finger domain 86 129 IPR001841 -
Rops6g02344 227 FunFam E3 ubiquitin-protein ligase ATL6 49 135 - -
Rops6g02344 227 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Rops6g02344 227 PANTHER OS11G0150450 PROTEIN 1 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02344 Rops-Chr6 42667314 42670159 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02344 13 136 C3H Transcription Factor Family AT4G10150 35.938 1.37e-20 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02344 - - gmx:100786109 427.557