Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02341 ATGAGTGACCCATATGGGTTGCCGGAGGATCTCCGGCGGATGATATCAGCAAGAACCCATTTGAGTAACAACACACATCAACCAGAGGCACTGAGTGTGTATGGTGCTGCTGCTGCTACTGCTACTTTTGCTCCTCCATCAAATAGCTATGACCCTATAATGGTTGGTGATGTTTTCTACCCTCGTGGATTCACTCACTATGCTCATCATCATCATGAGTATTCCTCCAGTGTCAACCCTACAAGTAACGCTACTACTACTACTGTTGCTGCTGCAACTGCTTCGGATCATGCTGCATTTTGTAGCATAGAGACTGCAGAAAAAGGGTGGCTTGGGTTTGATTCCGGGAATAACAGGTGGCCTAGACAAGAGACCCTTTCACTTCTAGAGATCAGATCTCGTCTTGATTCAAAGTTCAGAGAGAATAATCAGAAAGCACCTTTGTGGAATGAAATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAACGAAGTGGAAAGAAATGCAAAGAGAAGTTTGAGAATTTGTACAAGTATTACAAGAAGACCAAGGAAGGTAAAGCTAGTAGACAAGATGGGAAGCACTACAGATTCTTCAGGCAGCTTGAAGCAATATGTGGAGAAGCAAGAACTCATGCCTCAACTTCAGAAAAAACCCATCATGCTGAAAACATTGTTGGTATTCAATCTCCAAGCTTCAAAATTAACCAATACAATGGTGACTTCAATAACCTCAAGTCCTCAGAGAGCCTCAGTTTCTCAAACTCATCTGAATTTGAGACATCTTCATCTGAGAACAATGATGAGGATCTTTCAGCTATTGCATCCATGATGAAACAGACAAGGGATAATAAGCAGAAAGGGTTAGACCAAAGACAAAATCATAGGAAGCATAGAAAAAGCTGGAGAGCTAAAGTAGAGGAGATAATGGATTCCCACATGAGGAAGATTATAGAGACTCAAGATGCATGGATGGAGAGAATGTTGAGTGTTGTTGAACAAAGAGAGCAAGAGATGACATCTAAGGAGGAAGAAAGGAAGAAAAAAGAGTCAATGAGGTTTGATCAAGAAGTACATGAACTTTGGGCTAAAGAGAAAGCATGGGTTGAAGCAAGAGATGCTGCATTGATAGAGGTTGTGAGGAAACACATTGGGATAGAACTTGAAACGTTGCCACTAGATGAAGCTATGGTTGAAGAACCACCAAATAAGAACAAGAGCCAGGCAAATGAATATCCCTGTGAAGCTGTGGATCATAACAACAGTAGATGGACAGAGATGGAGATTTCAAATTTGATACAGCTGAGGACTAGTTTTGAACAGCGACTAAGAGAAAATGGGTATCTGGAGACTGCCATTTGGGATGAAATAGCTGAAAAAATGGCTTTTTTGGGCTTTGATAGGAATGCAGCTGAGTGCAAGCAAATATGGGATGAGATCAGCATCTCTCTTAGAAGGACAGTGGAGTGTGATACCAAAACAAGGCCTTGGTGTTTGGGACTTAAGCTGACGGATGATGACCTTTGA 1527 0.4178 MSDPYGLPEDLRRMISARTHLSNNTHQPEALSVYGAAAATATFAPPSNSYDPIMVGDVFYPRGFTHYAHHHHEYSSSVNPTSNATTTTVAAATASDHAAFCSIETAEKGWLGFDSGNNRWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGEARTHASTSEKTHHAENIVGIQSPSFKINQYNGDFNNLKSSESLSFSNSSEFETSSSENNDEDLSAIASMMKQTRDNKQKGLDQRQNHRKHRKSWRAKVEEIMDSHMRKIIETQDAWMERMLSVVEQREQEMTSKEEERKKKESMRFDQEVHELWAKEKAWVEARDAALIEVVRKHIGIELETLPLDEAMVEEPPNKNKSQANEYPCEAVDHNNSRWTEMEISNLIQLRTSFEQRLRENGYLETAIWDEIAEKMAFLGFDRNAAECKQIWDEISISLRRTVECDTKTRPWCLGLKLTDDDL* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02341 508 CDD GT1 118 184 - -
Rops6g02341 508 CDD GT1 422 487 - -
Rops6g02341 508 PANTHER FI21293P1 78 496 - -
Rops6g02341 508 FunFam Trihelix transcription factor GT-2 424 486 - -
Rops6g02341 508 Gene3D - 120 182 - -
Rops6g02341 508 Gene3D - 424 486 - -
Rops6g02341 508 Coils Coil 325 352 - -
Rops6g02341 508 Pfam Myb/SANT-like DNA-binding domain 422 489 IPR044822 -
Rops6g02341 508 Pfam Myb/SANT-like DNA-binding domain 118 205 IPR044822 -
Rops6g02341 508 ProSiteProfiles Myb-like domain profile. 118 177 IPR001005 -
Rops6g02341 508 SMART sant 116 179 IPR001005 -
Rops6g02341 508 SMART sant 420 483 IPR001005 -
Rops6g02341 508 FunFam trihelix transcription factor PTL-like 120 182 - -
Rops6g02341 508 MobiDBLite consensus disorder prediction 283 303 - -
Rops6g02341 508 ProSiteProfiles Myb-like domain profile. 416 481 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02341 Rops-Chr6 42612524 42615993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02341 119 486 Trihelix Transcription Factor Family AT5G03680 43.147 1.91e-85 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Rops6g02341 Myb_DNA-bind_4 4.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02341 - - gmx:100784522 658.292