Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02334 ATGGACGTGCCGAAACACCGCACCACAAGAACTACTACGTCTTTGAGCGATGCCTCTGAGTCCTCCAAGATGGAGGTCACTGGTAGCTGGGACGCCATCGAATGGACCAAGATTGAGCCAATTTCACGCTATGTCTCGCACGCGAATCTTGATTTCTTGCTCGAGGCGGAGCAAGTTGTAGCCGAGGGTCATGGTGTTGTTCTTATTAATACAGATGATGCGGGCATGTTGATAGTAACAAATTTTCGTCTTCTTTTTCTGAGTGAGGGAACTAGAAAAGTTATTGCTCTTGGAACAATACCACTGGCAACCATTGAGAAGTTTAACAAGATAGTCGTAAAGGTTCAGTCGAATGCTCGTCAATTAGACAAGACACGAACACAGAGATTGCTCCAGGTGATTGGAAAAGATATGAGAATTATAGTCTTTGGTTTCAGGGCTCGTACAAAACAGAGACGTGTGATATTTGATGCACTACTGAGGTGTACAAAGCCAACAAGATTGTGGGATCTTTATGCTTTTGCATCTGGACCTTCTAGGTTTAAGAACACTACTCCACTGGTGCGCTTATTGGATGAGTATTTTCGACTTCTTTGCAAAGGTTCTTATCGTGCATCAAGCAACATGATTGAAAGTGGGTCCTTCACCTTGTCAAATAACTTATGGAGAATAAGTAGTGTGAATTTGAATTATACAATGTGCCAGAGTTATCCATTTGCTTTGGTTGTTCCGAAGATCATTAGCGATGATGAAGTACTCCAGGCTTGCAGCTTCCGTGCAAGATGTCGACTGCCTGTGATTTCATGGTGTCATCCTGTTACTGGAGCAGTTCTTGCACGTTCTTCCCAACCTTTAGTTGGTCTGATGATGAATATGAGGAGCAACATGGATGAAAAACTTGTGGCTGCACTTTGCAGCAAACTTGATGATGGTTCACGGAGAAAGCTATATATTGCTGATGCGAGGCCAAGGAAAAATGCATTAGCTAATGGAGCCATGGGAGGTGGTTCGGAATCATCATCAAACTATTTTCAATCTGAGGTAGTCTTTTTTGGGATAGACAACATCCATGCAATGAGAGAGAGCTTTGTTCGGCTTCGAGAATACATGGACACTCATGGCCGAGCGTCATCAGATGGAATGTCATCTTTTTTGAGACATGGTGGGTCGACATGGAGTGGAGGCAATTTAAGTAGTATGTCTGCTTCAGTATCAACCCTTGGGGACATTGGATGGTTACTGCATGTTCAGAATGTCTTGGCTGGTGCAGCTTGGATTGCTGCTCGTGTTGCTATGGAAAAGGCTTCTGTTCTTGTACATTGCAGTGATGGATGGGATAGGACAAGCCAGTTGGTTTCACTTGCAAATTTGTTGCTTGATCCATATTATCGGACATTCACAGGTTTTCAGGGACTTGTTGAAAAAGACTGGCTAGCATTTGGTCATCCATTTTCTGATCGTGTGGGAACGCCATCTGTCTCTGGAAGTGGCAACATGCCTTTCGAGTTATCTAGGCAGTCTTCAACTAGCAATTTCCCATCATCACCCATGCGCCAGTCATCAGGAGCATTCTCATCTCAACCTCCAGCTTCGTCTCACGCACATACCTCAAACAACTACTCCCCCATTTTTTTGCAGTGGGTTGATTGTGTTTCACAATTGTTGCGGATGTATCCTTTTGCTTTTGAGTTTTCTGCGGTTTTCCTGGTGGACTTCTTAGACTGCATGCTTTCTTGTCGCTTTGGAAACTTCTTTTGTAACAGTGAGAAGGAGAGGCTGCAATGCAATGTTTTCGAAACTTGTGGATGTTTGTGGGTATACTTAGCTGATTTGCGGACATCAGAAGGAAGTTCCCATGTGCATTGTAATCCCTTTTATGATCCACTGAAGCACAATGGTCCTCTTTTGCCCCCAGCAGCAGCATTAGCCCCAACTTTATGGCCCCAATTCCACCTTCGTTGGGCCTGCCCAGAAGAAGCACAAGCTGGAGAGATTGAAGTACAATGTAGGAAGCTAGTTATGAAAAACTCTGAGATGCAGAAGGCTAAAGAAGTTGCAGAAAGAAACGCTAAAGAAATTACAAATGCCATGGAATCGTTGAATGCAGAATTGCAACGCGAGAAACAGCGAAATAGCTCAGCTTTGAACACGGCCAGGAGGATAAGCAAAGAAAATACTGCCATAAAGCGTGCAATTCAGTCAATTGGGTGCAAGGTTCACTTCTCTAGTAGTGGTGATTGCATTGTTGACATTGAAAGCAACCCAGCGGAAGCAACACAAAACATTTTGCATTGTCCCTCTAGGCGAGAATCAAATAGCGCTGTGCTTGATGACAAAAAGGATCTATCTGTTCCAGTAATTGTTACAGCAGATGATGATGATGATGGAAACAATGCTATTGGTCGAATATGCGAAACTCTGTGCCCATTTCGTACTGGAGATGGATGCTGCAAGTGGCCACATGGTGATTGTGCTCGGTTTGGTAGCCAGTTTGTTGGTTTGAAAGCAAATTTTGATGCATTTGACCAACTTTCGATTGATGATAGTTATTTCAAGTCTGAGTAA 2565 0.4366 MDVPKHRTTRTTTSLSDASESSKMEVTGSWDAIEWTKIEPISRYVSHANLDFLLEAEQVVAEGHGVVLINTDDAGMLIVTNFRLLFLSEGTRKVIALGTIPLATIEKFNKIVVKVQSNARQLDKTRTQRLLQVIGKDMRIIVFGFRARTKQRRVIFDALLRCTKPTRLWDLYAFASGPSRFKNTTPLVRLLDEYFRLLCKGSYRASSNMIESGSFTLSNNLWRISSVNLNYTMCQSYPFALVVPKIISDDEVLQACSFRARCRLPVISWCHPVTGAVLARSSQPLVGLMMNMRSNMDEKLVAALCSKLDDGSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEVVFFGIDNIHAMRESFVRLREYMDTHGRASSDGMSSFLRHGGSTWSGGNLSSMSASVSTLGDIGWLLHVQNVLAGAAWIAARVAMEKASVLVHCSDGWDRTSQLVSLANLLLDPYYRTFTGFQGLVEKDWLAFGHPFSDRVGTPSVSGSGNMPFELSRQSSTSNFPSSPMRQSSGAFSSQPPASSHAHTSNNYSPIFLQWVDCVSQLLRMYPFAFEFSAVFLVDFLDCMLSCRFGNFFCNSEKERLQCNVFETCGCLWVYLADLRTSEGSSHVHCNPFYDPLKHNGPLLPPAAALAPTLWPQFHLRWACPEEAQAGEIEVQCRKLVMKNSEMQKAKEVAERNAKEITNAMESLNAELQREKQRNSSALNTARRISKENTAIKRAIQSIGCKVHFSSSGDCIVDIESNPAEATQNILHCPSRRESNSAVLDDKKDLSVPVIVTADDDDDGNNAIGRICETLCPFRTGDGCCKWPHGDCARFGSQFVGLKANFDAFDQLSIDDSYFKSE* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02334 854 Pfam Myotubularin-like phosphatase domain 172 592 IPR010569 -
Rops6g02334 854 SMART gram2001c 42 112 IPR004182 -
Rops6g02334 854 MobiDBLite consensus disorder prediction 1 20 - -
Rops6g02334 854 Gene3D - 64 163 IPR011993 -
Rops6g02334 854 SUPERFAMILY PH domain-like 53 175 - -
Rops6g02334 854 ProSiteProfiles Myotubularin phosphatase domain. 202 651 IPR010569 -
Rops6g02334 854 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 213 655 IPR029021 -
Rops6g02334 854 Coils Coil 676 717 - -
Rops6g02334 854 MobiDBLite consensus disorder prediction 504 536 - -
Rops6g02334 854 ProSitePatterns Tyrosine specific protein phosphatases active site. 439 449 IPR016130 GO:0016311|GO:0016791
Rops6g02334 854 PANTHER MYOTUBULARIN-RELATED 28 759 IPR030564 -
Rops6g02334 854 CDD PTP-MTM-like 262 553 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02334 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 68.261 0.0 1170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02334 K18081 - gmx:100781842 1463.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02334 6 42460453 42494586 Rops6g02334 6 42460453 42494586 ECH