Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02328 ATGAATGAACTACTCCACAACCCAGAGGCTATGTTAAAAGCCAAAAAGGAGTTGGAGCAAACCATTGGAAGAGGTAATCCAATTGAGGAATCAGACATTGCAAGACTTCCATACTTACAAGCAGTGATAAAAGAAACCTTGCGTATGTACCCGCCAGGTCCGCTTTTAGTCCCTCGAAAAGCCAAGGTAGACGTTGAAATATCTGGCTTCACGATACCACAGGGTGCTCAAGTTCTAATCAATGTGTGGGCCATTGGTAGGAACCCAAGCATATGGGACAATGCAAATTCATTTTCACCAGAAAGATTCTTAGGATCCGAGATTGAAGTGAAAGGTCGTCATTTTCAGCTTACCCCATTTGGCAGTGGGCGACGTATATGTCCTGGCTTGAACTTAGCTGTTAAGATGTTGCATTTGATGTTGGGATCATTGATAAACTGTTTTGACTGGAAACTTGAAAATAATATGGAACCGAAGGATATGGACTTGGATAAACCCCATAGAGCTATTCCAGTTATAATAAACAACTAA 531 0.4143 MNELLHNPEAMLKAKKELEQTIGRGNPIEESDIARLPYLQAVIKETLRMYPPGPLLVPRKAKVDVEISGFTIPQGAQVLINVWAIGRNPSIWDNANSFSPERFLGSEIEVKGRHFQLTPFGSGRRICPGLNLAVKMLHLMLGSLINCFDWKLENNMEPKDMDLDKPHRAIPVIINN* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02328 176 Gene3D Cytochrome P450 1 169 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02328 176 PRINTS E-class P450 group I signature 127 150 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02328 176 PRINTS E-class P450 group I signature 81 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02328 176 PRINTS E-class P450 group I signature 40 58 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02328 176 PRINTS E-class P450 group I signature 117 127 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02328 176 SUPERFAMILY Cytochrome P450 2 158 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02328 176 FunFam Predicted protein 1 170 - -
Rops6g02328 176 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 1 165 - -
Rops6g02328 176 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 120 129 IPR017972 GO:0005506|GO:0016705
Rops6g02328 176 PRINTS P450 superfamily signature 41 52 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02328 176 PRINTS P450 superfamily signature 127 138 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02328 176 PRINTS P450 superfamily signature 118 127 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02328 176 PRINTS P450 superfamily signature 6 19 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops6g02328 176 Pfam Cytochrome P450 3 162 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02328 Rops-Chr6 42366258 42366788 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02328 1 172 Cytochrome P450 AT2G45550 56.593 8.78e-72 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02328 - - lja:Lj0g3v0207649.1 289.656