Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02314 ATGGGGAAGGTTATTCTAGATGAAAGTTCTGGTGTCTTCACTATGTGTTTGGTGAGCTCCCTCCAACTCCGGCACACACCACCACGCTCCTCCGCAATGGCCATGTGTCCTCCGACGCCTCAATTCAGGGAACCTCACAGAGGAGCTCCTGAGTTAACAACACAAACTGAAACTGAAACTGAAACTGAAGTTTGCTCAACCAACCAACACTGTCTCATAATCATGAACTGTCTTCACAATCTTCCTCGATCCTTTGTTTTGCCCTTCCAAGCAGTTGTTACGCGCCACCACCCCAATAATCTTTCTTTCTCTTCTCTTTCCCCGGGAATCTTCAATAATTCTCATCCAAATCGAAGCATGGCACTTAAGTCAGTTTCTGGTTCTATTCCTGGTGCAGAGACAAGTAGCTCCAATGTGAAGGAAGAAAAGTCTGAGACATATAGTCATAACATGACAGAAGCTATGGGTGCTGTTTTGACTTATAGGCATGAATTAGGAATGAACTACAACTTCATCCGTCCAGATTTGATCGTGGGATCATGCCTACAGACTCCTGAAGATGTTGACAAGCTGCGTAAAATCGGAGTGAAAACTATATTTTGCTTGCAACAAGATCCAGACCTAGAATATTTTGGAGTTGATATCAATGCCATCCGAGAATATGCCAAGACATGCAATGACATTCAACACTTGCGTGCTGAGATAAGGGACTTTGATGCATTTGATTTACGGTTCCGGCTTCCAGTTGTAGTTAGCAAATTATACAAGGCAATAAATTCCAATGGAGGTGTGACATATATACACTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTGGCGTTGGCATATATGTTTTGGGTTTTGGGTTATAAACTTAATGACGGTCATACACTACTTCAGAGCAAAAGGTCATGCTTTCCAAAACTGGATGCCATAAAAAGTGCAACGGCTGATATTCTTACAGGCTTTAGTAAGAAGCCTGTCACTTTGTCATGGGAAGACAGCAATTGCTCTACGGTGGAAATTTCAGGACTTGACATTGGATGGTGGCAGAGAATGCCCCTAAATTTTGATGACAAACGGGGTTTGTGGTTTCTCGAGAGGGAATTGCCCGAAGGACGCTACGAGTACAAATACATTGTTGATGGGGAATGGACATGCAACAAGGATGAGCTTGTAACCTCTCCCAACAATGATGGCCATGTCAACAATTTTCTTCAAGTCCTTGATGACACCAGCGGTGTTCGTGCTTCCCTTAGTGAGAGATTGACTGGTGATGATCCTGATCTCACAAAGGATGAAAGACTCGGAATAAAAGAGTTTCTTGAAGCTTGTCCCCATGAGGATCTGTGA 1353 0.4375 MGKVILDESSGVFTMCLVSSLQLRHTPPRSSAMAMCPPTPQFREPHRGAPELTTQTETETETEVCSTNQHCLIIMNCLHNLPRSFVLPFQAVVTRHHPNNLSFSSLSPGIFNNSHPNRSMALKSVSGSIPGAETSSSNVKEEKSETYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRKIGVKTIFCLQQDPDLEYFGVDINAIREYAKTCNDIQHLRAEIRDFDAFDLRFRLPVVVSKLYKAINSNGGVTYIHCTAGLGRAPAVALAYMFWVLGYKLNDGHTLLQSKRSCFPKLDAIKSATADILTGFSKKPVTLSWEDSNCSTVEISGLDIGWWQRMPLNFDDKRGLWFLERELPEGRYEYKYIVDGEWTCNKDELVTSPNNDGHVNNFLQVLDDTSGVRASLSERLTGDDPDLTKDERLGIKEFLEACPHEDL* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02314 450 Gene3D Immunoglobulins 323 413 IPR013783 -
Rops6g02314 450 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 245 303 IPR000387 GO:0016311|GO:0016791
Rops6g02314 450 SMART dsp_5 168 318 IPR020422 GO:0006470|GO:0008138
Rops6g02314 450 Pfam Glycogen recognition site of AMP-activated protein kinase 327 410 IPR032640 -
Rops6g02314 450 ProSiteProfiles Dual specificity protein phosphatase domain profile. 168 325 IPR020422 GO:0006470|GO:0008138
Rops6g02314 450 MobiDBLite consensus disorder prediction 124 147 - -
Rops6g02314 450 MobiDBLite consensus disorder prediction 39 61 - -
Rops6g02314 450 Pfam Dual specificity phosphatase, catalytic domain 211 306 IPR000340 GO:0008138|GO:0016311
Rops6g02314 450 CDD E_set_AMPKbeta_like_N 327 408 - -
Rops6g02314 450 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 161 342 - -
Rops6g02314 450 CDD DSP_laforin-like 167 314 IPR045204 GO:0019203
Rops6g02314 450 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 323 413 - -
Rops6g02314 450 SUPERFAMILY E set domains 326 409 IPR014756 -
Rops6g02314 450 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 165 310 IPR029021 -
Rops6g02314 450 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 82 447 - -
Rops6g02314 450 Gene3D Protein tyrosine phosphatase superfamily 161 441 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02314 Rops-Chr6 41992043 42001201 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02314 167 450 Protein tyrosine phosphatase (PTP) family AT3G52180 67.958 3.84e-147 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02314 - - gmx:100804010 652.514