LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops6g02306	ATGACAGATTTTCAGCCTCTACAGCAGAAGCCTGAACCTGCTGATGCTCATGCTGAGTTTGAGCGTGGATTGGAGGATTTTATGCATGGGCACTTGGATGATTGTATGTCATTTGCTTCGTGTAGCTCTTCTCGTGCACAGGATGATGAAGATGATGAGGGTGATCAGCTGGTTCGGAGGAGAAGGAGGTCTGATCTTGAAGGGGATGATTTAGCAGAGTCGTCAGCTGCGCGGAGGAGGCATTCGCGGATTTTGAGCAGATGGGCTGCCAGGCAGGCGCAGGAGATGATAACTACCATTGAGAGGAGGAATCGAGAGTCTGAGTTGATGGCACTTGCAGGATTACATACGGTCTCTATGTTAGACTCCTCTTTTCTGAGGGGATCACAGTCTCCAACTTCTGGCCAGGAGGGGGCTGTGGAGAGGCCAAGCACTCAGGCATCTGCCATTCTTCAGATGTGGCGTGAGTTGGAGGATGAACATTTATTGAATCGGGCACGTGAAAGGATGAGGGAGAGGTTAAGGCAGCAAAGGAGTTCTGACTCTAATACCAATGTGTCCAGTACCATGTCTGACAGTCGAGGCAGTGAGAATCAAGGGAGTTTGGGGGATGCAAGTGAAAGTGAAAATGATTATGGTACTTGGTCACATGATCAGATTGGATCACGGAATGCACATGGGAATCATAATGGGTCTAGCAGGGAGCAATCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTCGAGGATGGATGGAAAGTGGTATTAGTGATCATTCATCTAACGTGAGTCAGAGAAACAATAATCATAGAGCAGAATGGCTTGGAGAAACTGAGCGTGAGAGGGTAAGAATTGTCAGGGAATGGGTGCAAATGACTAGCCAGCAGAGAGGTTCACGTGGTAGCCGGAGGGATGCTCAAGTAAGTGAATCTGCTCAAGTTGATCGAGTCCGTAATGCAGTAGCTGATCATGATGAGGGTCAGCCGGAGCATGTTCGACGGGACATGTTGAGGTTGCGTGGGAGACAGGCTCTAGTTGATTTGCTTGTGAGGATAGAAAGGGAAAGACAGAGAGAGCTGCAGGGCTTGTTGGAGCACCGAGCTGTTTCTGATTTTGCTCATCGCAACCGGATTCAGTCATTGCTCAGAGGTAGATTCCTCCGAAATGAAAGAACTGTGGAAGATGAGAGGCCTCCGTCTATGGCTGCAAGTGAATTAGTTCAATTAAGACAACGACACACAGTCTCTGGTTTAAGGGAGGGATTTCGTTCAAGATTAGAAACTATTGTTCGTGGTCAAGCAGGCACCAATCCTGATGCCACATCAAATAGTAACATTAATGAAACAAGAAGCAACGAGAGCCAAGCAAACAATCTGATAGATTCCCAGCAAGAAAATTATGGAGGAGAGCAGATTAGGAGCCCGGAAACTGATGTGCGTCTGTTACCTAATCAAACAGGAACTTTGGAGAGTAGCACCAGTGAGACTGTTAGTTGGCAAGAAGCTAATAATCAACGAGGGAATTGGCAGGAACAAATTGCTGAAGATGGAGGAGAAAACTGGCAGCAGAGAACTTATGGTCCATTCAATCAGCTGAGAGATGGAAGGGCAGTCAGTGATTGGCCACAGGCAACTCCCACAAATATAGCTGGGGAAGATCCTCATCCACGAGAAGCTCAAAGAGTTTGGCATGAGGATAGCACAAGGGAAGCTATTGGTAATTGGTCTGAAGGACCTTCTGGAGCTTCAAGGAACCGCCGTGGTGTTCCTTTTAGAAGATTCAATAGATTTCATCCTCCTGATGATGATAATGTATACAGTATGGAGCTTCGAGAACTTCTGAGCAGGAGAAGTGTTTCCAACCTTCTTCGCAGTGGTTTTCGTGAAAGTCTGGACCAACTAATACAGTCATATGTGGAAAGGCAAGGTCGTGTGCCAATTGACTGGGATTTGCATCGGAACTTGCCAACACCAACTCCCGCCTCACCTGAACGGGACCCTGATCAGCAGGGTGAGGAACGTAATGAAGGTCAGCATGAAGCCATTAACAGACCTGCACTGGTGTTGCCTTCTCCACCAGTACCTCCGCCACAACCACTGTGGCACCAAGATTTGCATCAACCTGGATGGTCCCGTCATAGCATGCATCGTTCTGAAATTGAGTGGGAGATCATGAATGACTTAAGATCAGATATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAACTGGAGTTGCAGCGTTCCGTCAGACAGGAGGTCTCTGCAGCTCTGAATCGCTCAGCTGGTGAAAATGGATTGGGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAAAAAGGAACTTGCTGTGTTTGTTGTGATAACCATATCGATTCACTTTTGTACAGATGTGGACACATGTGCACATGTTCCAAATGTGCCAATGAGTTAGTTCGTGGTGGAGGTAAATGTCCTTTATGCCGAGCACCAATTGCTGAGGTGGTCCGAGCATATTCCATACTGTAA	2559	0.4748	MTDFQPLQQKPEPADAHAEFERGLEDFMHGHLDDCMSFASCSSSRAQDDEDDEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASAILQMWRELEDEHLLNRARERMRERLRQQRSSDSNTNVSSTMSDSRGSENQGSLGDASESENDYGTWSHDQIGSRNAHGNHNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNVSQRNNNHRAEWLGETERERVRIVREWVQMTSQQRGSRGSRRDAQVSESAQVDRVRNAVADHDEGQPEHVRRDMLRLRGRQALVDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTVEDERPPSMAASELVQLRQRHTVSGLREGFRSRLETIVRGQAGTNPDATSNSNINETRSNESQANNLIDSQQENYGGEQIRSPETDVRLLPNQTGTLESSTSETVSWQEANNQRGNWQEQIAEDGGENWQQRTYGPFNQLRDGRAVSDWPQATPTNIAGEDPHPREAQRVWHEDSTREAIGNWSEGPSGASRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRVPIDWDLHRNLPTPTPASPERDPDQQGEERNEGQHEAINRPALVLPSPPVPPPQPLWHQDLHQPGWSRHSMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGLGAETSDDGSKWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIAEVVRAYSIL*	853

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops6g02306	852	SUPERFAMILY	RING/U-box	799	845	-	-
	Rops6g02306	852	Pfam	Zinc finger, C3HC4 type (RING finger)	797	844	-	-
	Rops6g02306	852	Coils	Coil	729	749	-	-
	Rops6g02306	852	Coils	Coil	450	470	-	-
	Rops6g02306	852	CDD	mRING-HC-C3HC5_NEU1	797	849	-	-
	Rops6g02306	852	MobiDBLite	consensus disorder prediction	670	684	-	-
	Rops6g02306	852	MobiDBLite	consensus disorder prediction	297	319	-	-
	Rops6g02306	852	MobiDBLite	consensus disorder prediction	172	244	-	-
	Rops6g02306	852	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	784	850	IPR013083	-
	Rops6g02306	852	PANTHER	RING/U-BOX SUPERFAMILY PROTEIN	110	852	-	-
	Rops6g02306	852	MobiDBLite	consensus disorder prediction	125	146	-	-
	Rops6g02306	852	MobiDBLite	consensus disorder prediction	41	78	-	-
	Rops6g02306	852	MobiDBLite	consensus disorder prediction	297	318	-	-
	Rops6g02306	852	MobiDBLite	consensus disorder prediction	52	78	-	-
	Rops6g02306	852	MobiDBLite	consensus disorder prediction	692	706	-	-
	Rops6g02306	852	ProSiteProfiles	Zinc finger RING-type profile.	800	839	IPR001841	-
	Rops6g02306	852	MobiDBLite	consensus disorder prediction	653	716	-	-
	Rops6g02306	852	MobiDBLite	consensus disorder prediction	436	461	-	-
	Rops6g02306	852	MobiDBLite	consensus disorder prediction	179	237	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops6g02306	Rops-Chr6	41784255	41791065	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops6g02306	782	846	C3H Transcription Factor Family	AT3G06140	37.879	6.06e-07	50.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops6g02306	-		-	gmx:100805607	1493.4